So fill free to add any relevant package or link to this page
Softwares
Machine software
Package |
ITP |
license |
comments |
check |
calculate optical properties of synchrtron radiation emitted from bending magnets, wigglers... |
http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/software.shtml
Data acquisition
Package |
ITP |
license |
comments |
GPL3 |
L ibrary for Im age A cquisition |
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check |
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gather all information from the user that can be provided prior to the tomography experiment. |
GPLv2+ ... keep the alphabetic order
Data Analysis
Package |
ITP |
license |
comments |
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tomographie |
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Common Data Model API |
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Laue indexation program |
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widget toolkit |
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GPLv3 GPLv2+ LGPLv3 |
ppa Crystallographic Object-Oriented Toolkit |
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ESO Common Pipeline Library |
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general purpose data acquisition and processing |
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A program for extracting electron diffraction ring pattern profiles |
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Diffraction Image Statistics Package for R |
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Framework to build online data analysis programs |
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General I/O libraries for accessing images of various detectors |
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SART reconstruction algorithm |
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A New Parallel Framework for Machine Learning |
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general purpose data acq and processing |
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diffraction pattern reconstruction |
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gisaxs -- diffraction |
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Lightweight powder diffraction data visualizer |
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µManager is a software package for control of automated microscopes |
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create scientific 2-dimensional graphs |
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automated determination of macromolecular structures |
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Fast Azimuthal Integration in Python |
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Tomography reconstruction |
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Python tools for Nano-structures Crystallography |
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?PyRod is an X-ray diffraction (mainly CTR) |
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Python package and gui for Small Angle X-Ray Scattering |
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Software for analysis of Quick Exafs data |
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Small angle scattering |
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Spatial distortion and azimuthal regrouping |
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Data server (middleware) for scientific data |
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3B Microscopy Analysis Software |
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Scientific data workflow |
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X-ray Powder Diffraction |
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![[?]](/htdocs/debwiki/img/moin-search.png "[?]"){kind=small}
binary only -- small angle scattering ... keep the alphabetic order
PXSoft
PXSoft from ESRF: mainly non-free software, non redistributable code for protein crystallography
here the url to the pxsoft at the esrf pxsoft
list of all availables package in the pxsoft directory, which one need to be packaged and wich one did not ? Is it possible for the esrf to tell which of thoses software are required ?, maybe there is very old obsolete soft.
aare |
Dectris diffraction image viewer and analysis tool replaced by albula |
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access_prod |
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this is just a tcl tk distribution |
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admin |
? |
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adp |
? |
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par of ccp4 |
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Dectris diffraction image viewer and analysis tool |
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AMoRe |
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non-free APL language is it really usefull ? |
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arp_warp |
arp_warp_5.2 |
arp_warp_6.0 |
arp_warp_6.1.1 |
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which part of the suite is used ? |
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non-free |
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need ccp4 used ? |
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BEST |
? |
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biox-xds |
? |
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BnP |
? |
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bobscript |
? |
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bp3_old |
? oldmeans useless ? |
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C3D |
file format ? |
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ccp4-4.1.1 |
ccp4-4.2.1 |
ccp4-5.0 |
ccp4-5.0.2 |
ccp4-5.99.5 |
ccp4-6.0 |
ccp4-6.0.1 |
ccp4-6.0.2 |
ccp4i_arp_warp |
ccp4mg |
ccp4_mpi |
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Computational Crystallography Toolbox |
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chart-0.5.3 |
? perl library |
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chimera |
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Chooch-4.01 |
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CLUSTALW |
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cn2coot |
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cns_refine_0.5 |
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cns_solve |
cns_solve_1.0 |
cns_solve_1.1 |
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coot |
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crank |
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crystfel |
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DAS |
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dialboxlinuxdriver |
dialbox_to_remove |
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dino |
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DNA |
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?DomainFinder |
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DPS2AR |
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dViewer |
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DynDom3D |
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EDNA |
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EDNA2html |
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Elves |
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epmr |
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escet |
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evrouter |
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fit2d |
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fobscom |
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ha_ncs |
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harker |
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?HbPlus |
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hca |
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hkl2map |
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hyss |
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imosflm |
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?InducedRadDam |
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ISPyBClient |
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Java1.6 |
Java2 |
Java2_1.3 |
Java2_1.4.1 |
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labelit |
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lam |
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laue |
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?LigEd |
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?LigPlot |
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?LigPlus |
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lscale |
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maid |
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Main |
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mar345 |
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marutils |
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mlfsom |
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molscript |
molscript-2.1.2 |
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mosflm |
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msi |
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nuccyl |
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nucplot |
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ono |
ono80 |
ono90 |
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pgplot_5.2 |
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phaser |
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phaser_sad |
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Phases |
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phenix |
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pirate |
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plotmtv |
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pointless |
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powder |
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promotif |
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PXPY |
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pymol |
pymol0.97 |
pymol0.98 |
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python |
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raddose |
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Raster3D_2.6c |
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refmac |
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replace |
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ribbons |
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ringer |
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rmerge |
hugins-tools ? |
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rosetta |
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rTools |
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saxs |
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GPLv3 --> ITP? |
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scala_MPI |
? scala |
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scsh-0.5.2 |
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shakerr |
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sharp |
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shelx |
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Sir |
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Sir2002 |
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snb2.2 |
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snow |
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solve |
solve-2.08 |
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STAC |
stac2 |
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strategy |
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surfnet |
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?TclTkBlt |
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testcase |
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test_exec |
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textal |
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theseus |
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tools |
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Tops |
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usf |
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viewhkl |
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wink |
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WorkflowDS |
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?WorkflowExecutor |
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xds |
XDSAPP |
xdsfix |
xds_old |
xdsstat |
xds_viewer |
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xia |
xia2 |
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xprep |
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XREC |
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?XtalView |