So fill free to add any relevant package or link to this page

Softwares

Machine software

Package

ITP

license

comments

spectra

check

calculate optical properties of synchrtron radiation emitted from bending magnets, wigglers...

http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/software.shtml

Data acquisition

Package

ITP

license

comments

gpib

hkl

LImA

GPL3

L ibrary for Im age A cquisition

OpenGDA

check

Tango

Tango control System Packaging

Tomography PreExperiment Data Collector

(./) GPLv2+

gather all information from the user that can be provided prior to the tomography experiment.

... keep the alphabetic order

Data Analysis

Package

ITP

license

comments

astra

[?]

tomographie

bsl

[?]

<!> binary only -- small angle scattering

cdma

[?]

Common Data Model API

clip

(./) GPL

Laue indexation program

comete

[?]

widget toolkit

coot

531904

GPLv3 GPLv2+ LGPLv3

ppa Crystallographic Object-Oriented Toolkit

cpl

641628

(./) GPLv2+

ESO Common Pipeline Library

dawn

[?]

general purpose data acquisition and processing

diffraction-ring-profiler

(./) GPLv3

A program for extracting electron diffraction ring pattern profiles

disp

(./) GPLv2

Diffraction Image Statistics Package for R

EDNA

Bugzilla

(./) GPLv3 + LGPLv3

Framework to build online data analysis programs

python-fabio

649008

(./) GPLv3

General I/O libraries for accessing images of various detectors

fit2d

[?]

<!> binary only -- powder diffraction

fitgisaxs

[?]

<!> Igor Pro -- gisaxs diffraction

fityk

FreeART

(./) LGPL

SART reconstruction algorithm

FullProf

[?]

<!> binary only -- powder diffraction

g3data

gnuplot

graphlab

[?] Apache license

A New Parallel Framework for Machine Learning

guidata

602554

guiqwt

602555

GSAS + EXPGUI

[?]

gumtree

[?]

general purpose data acq and processing

hawk

[?]

diffraction pattern reconstruction

ifeffit

imagej

imagej TOMO pluggins

[?]

IsGISAXS

(./) GPLv3

gisaxs -- diffraction

jpowder

(./) GPL3

Lightweight powder diffraction data visualizer

kile

lauetools

(./) CeCILL

laueutil

(./) MPL

mantid

[?]

micromanager

646853

(./) GPL

┬ÁManager is a software package for control of automated microscopes

mmdb

[?]

mmtk

642586

nmoldyn

[?]

nexus

ngraph-gtk

649345

(./) GPL2

create scientific 2-dimensional graphs

objcryst-fox

octave

phenix

[?]

automated determination of macromolecular structures

pyfai

656633

(./) GPLv3

Fast Azimuthal Integration in Python

PyHST

(./) GPLv2+

Tomography reconstruction

pymca

PyNX

(./) CeCILL-B

Python tools for Nano-structures Crystallography

pyrod

[?]

?PyRod is an X-ray diffraction (mainly CTR)

pySAXS

(./) CeCILL

Python package and gui for Small Angle X-Ray Scattering

prestopronto

(./) GPLv3

Software for analysis of Quick Exafs data

qtiplot

qtoctave

SASTBX

[?]

Small angle scattering

scilab

situs

681751

sixpack

spd

644518

(./) LGPLv3

Spatial distortion and azimuthal regrouping

spyder

thredds

650261

(./) MIT

Data server (middleware) for scientific data

threeB

(./) GPLv3

3B Microscopy Analysis Software

vistrails

644096

(./) BSD

Scientific data workflow

xrdua

(./) GPLv3

X-ray Powder Diffraction <!> test if it works with gdl

xylib

xmaxima

xotoko

[?]

xrayutilities

[?]

... keep the alphabetic order

PXSoft

PXSoft from ESRF: mainly non-free software, non redistributable code for protein crystallography

here the url to the pxsoft at the esrf pxsoft

list of all availables package in the pxsoft directory, which one need to be packaged and wich one did not ? Is it possible for the esrf to tell which of thoses software are required ?, maybe there is very old obsolete soft.

3DNA

aare

Dectris diffraction image viewer and analysis tool replaced by albula

access_prod

?

ActiveState-tcltk

this is just a tcl tk distribution

admin

?

adp

?

adxv

aimless

par of ccp4

albula

Dectris diffraction image viewer and analysis tool

AMoRe

? r-cran-amore

apbs

APLx

non-free APL language is it really usefull ?

arp_warp

arp_warp_5.2

arp_warp_6.0

arp_warp_6.1.1

atsas

which part of the suite is used ?

autodock

autoPROC

non-free

babel

openbabel

Balbes

need ccp4 used ?

BEST

?

bioxhit

biox-xds

?

BnP

?

bobscript

?

bp3_old

? oldmeans useless ?

C3D

file format ?

CATH

ccp4

ccp4-4.1.1

ccp4-4.2.1

ccp4-5.0

ccp4-5.0.2

ccp4-5.99.5

ccp4-6.0

ccp4-6.0.1

ccp4-6.0.2

ccp4i_arp_warp

ccp4mg

ccp4_mpi

cctbx

679905

Computational Crystallography Toolbox

chart-0.5.3

? perl library

chimera

Chooch-4.01

CLUSTALW

cn2coot

cns_refine_0.5

cns_solve

cns_solve_1.0

cns_solve_1.1

coot

crank

crystfel

DAS

dialboxlinuxdriver

dialbox_to_remove

dino

DNA

?DomainFinder

DPS2AR

dViewer

DynDom3D

EDNA

EDNA2html

Elves

epmr

escet

evrouter

fit2d

fobscom

gnuplot

gramm

grasp

ha_ncs

harker

?HbPlus

hca

hkl2map

hyss

imagej

imosflm

?InducedRadDam

ipymol

ISPyBClient

default-jdk

Java1.6

Java2

Java2_1.3

Java2_1.4.1

jmol

labelit

lam

laue

?LigEd

?LigPlot

?LigPlus

lscale

maid

Main

mar345

marutils

mercury

mgltools

mlfsom

molscript

molscript-2.1.2

mosflm

msi

nuccyl

nucplot

ono

ono80

ono90

pgplot_5.2

phaser

phaser_sad

Phases

phenix

pirate

plotmtv

pointless

povray

powder

promotif

PXPY

pymol

pymol0.97

pymol0.98

python

raddose

rasmol

raster3d

Raster3D_2.6c

refmac

replace

ribbons

ringer

rmerge

hugins-tools ?

rosetta

rTools

saxs

saxsview

GPLv3 --> ITP?

scala_MPI

? scala

scsh-0.5.2

shakerr

sharp

shelx

Sir

Sir2002

snb2.2

snow

solve

solve-2.08

STAC

stac2

strategy

surfnet

?TclTkBlt

testcase

test_exec

textal

theseus

tools

Tops

usf

viewhkl

wink

WorkflowDS

?WorkflowExecutor

xds

XDSAPP

xdsfix

xds_old

xdsstat

xds_viewer

xia

xia2

xprep

XREC

?XtalView