Debian Med 2019 Sprint
Location, Date
- March 9 (Saturday) - 11 (Monday), 2019 **
Location: Vilnius, Lithuania, NVO Avilys coworking space Tauro g. 12, Vilnius LT-01114, Lithuania https://goo.gl/maps/125dEvYMtBS2
This is an informal co-working and co-learning event, participants are welcome to attend on the days that work for their schedule. There is a possibility to arrive or depart a day earlier or later, ask on the mailing list if this interests you.
IRC: #debian-med on irc.debian.org (OFTC)
?Sprints/2019/DebianMed2019Notes
Getting there
Use this link to get travel recommendations: https://www.rome2rio.com/map/My-hometown/Tauro-g-12-Vilnius-01114-Lituania
Travel wise you can fly into the VNO with many low cost flights. Travel time from the airport to the venue is 7 minutes by taxi, 20 minutes by city bus (1 EUR, pay on the bus)
Lithuania's second city, Kaunas, also has an airport (KUN) and is 1.5 hours away by train or bus. (The KUN to Vilnius bus scheduled is linked to the RyanAir flights: https://www.ollex.lt/en/express/Kaunas-airport/buy-a-ticket#
Accomodations proposal
Participants
(tentative/final list of participants here before/after the sprint)
No |
Name |
confirmed |
booked accom. |
Organisation |
Living in |
Arrival at |
Departure at |
|
1 |
Michael R. Crusoe |
Yes |
N/A |
CWL/VšĮ "Darbo eigos" |
LT |
2019-03-09T08:00 |
2019-03-11T21:00 |
|
2 |
Andreas Tille |
tille |
Yes |
N/A |
Debian |
DE |
? |
? |
3 |
Andrius Merkys |
Yes |
N/A |
Vilnius University |
LT |
2019-03-09T08:00 |
2019-03-11T21:00 |
|
4 |
Olivier Sallou |
osallou |
No |
N/A |
Debian |
FR |
? |
? |
5 |
Steffen Möller |
moeller |
Yes |
please do |
Debian |
DE |
early |
|
Please use ISO 3166 two-letter country codes and YYYY-MM-DDTHH:MM format.
Agenda
Michael R. Crusoe
Ship more CWL descriptions in /usr/share/commonwl/ http://www.commonwl.org/v1.0/CommandLineTool.html#Discovering_CWL_documents_on_a_local_filesystem
For app that use <seqan/arg_parse.h> and that lack a curated CWL description:
- Generate a CTD description for each binary using the hidden --write-ctd option combined
Convert that CTD to CWL with https://github.com/WorkflowConversion/CTDConverter
- Install that CWL description to /usr/share/commonwl as part of the package
Continue the packaging of popular CWL executors with full CWL v1.0.x support like toil-cwl-runner and Arvados. Assist packaging of Galaxy in anticipation of their CWL support.
Bring CWL workflows to Debian in their own right with automated testing.
Steffen Möller
Revisit ?AutoDockTools
- bcbio workflow and its dependencies + Python 3 ports
- preparation for booth at upcoming conference(s)
Reports
Acknowledgements
the sprint has been possible thanks to:
donations to the Debian project [confirmation pending]
http://www.nvoavilys.lt/ NVO Avilys for donation of the work space and WiFi