Debian Med 2018 Sprint

Location, Date

This is an informal co-working and co-learning event, participants are welcome to attend on the days that work for their schedule.

Getting there

Hotel proposal

TBD

Food at the venue

TBD

Food nearby

TBD

Participants

(tentative/final list of participants here before/after the sprint)

No

Name

Email

confirmed

booked accom.

Organisation

Living in

Arrival at

Departure at

1

Cedric Notredame

Yes

N/A

local

-

-

2

Steffen Möller

<moeller>

Yes

Debian

DE

2018-02-09

2018-02-13

3

Andreas Tille

<tille>

Yes

Debian

DE

2018-01-25

2018-01-29

4

Sascha Steinbiss

<satta>

No

Debian

DE

2018-01-26

2018-01-29

5

Michael R. Crusoe

mrc commonwl.org

No

CWL/Debian

LT

TBD

TBD

6

Matúš Kalaš

matus.kalas uib.no

No

Uni Bergen & EDAM

NO

2018-02-07

2018-02-12

7

Tony Travis

tony.travis

Yes

No

minke.informatics.co.uk

UK

TBD

TBD

Please use ISO 3166 two-letter country codes and YYYY-MM-DDTHH:MM format.

Agenda

Ship more CWL descriptions in /usr/share/commonwl/ http://www.commonwl.org/v1.0/CommandLineTool.html#Discovering_CWL_documents_on_a_local_filesystem

For app that use <seqan/arg_parse.h> and that lack a curated CWL description:

  1. Generate a CTD description for each binary using the hidden --write-ctd option combined
  2. Convert that CTD to CWL with https://github.com/WorkflowConversion/CTDConverter

  3. Install that CWL description to /usr/share/commonwl as part of the package

Continue the packaging of popular CWL executors with full CWL v1.0.x support like Toil, Arvados, and Rabix Bunny.

Personal agendas

Tony Travis

Reports

Personal Reports

Tony Travis

  1. Update on Bio-Linux 8.0.8 point release
  2. Progress towards Bio-Linux 9

Acknowledgements

the sprint has been possible thanks to:


CategorySprint