Notes from the 2017 Debian Med Sprint in Bucharest
Progress on meeting goals
- Complete dependencies for Galaxy
- reiterating on borked python-bx packaging - now in New Queue
- Package Toil resource distributor for CWL workflows
uploaded dependency https://github.com/BD2KGenomics/bd2k-python-lib as python-bd2k - now in New Queue
- ITP for Toil ist out
Updating cwltool & schema-salad: done. Sascha is adding cwl-runner via update-alternatives
- uploaded
- packaging bcbio: MRC working on it and pybedtools dependency
Project ideas
List of demands for development discussed/identified during the meeting
- bash autocomplete from CWL tool descriptions
- manual page generation from CWL tool descriptions
using acd2cwl to generate CWL descriptions for the EMBOSS tools