Differences between revisions 7 and 8
⇤ ← Revision 7 as of 2017-01-14 10:14:38 →
Size: 833
Editor: ?MichaelCrusoe
Comment:
← Revision 8 as of 2017-01-14 11:56:53 → ⇥
Size: 1030
Editor: SteffenMoeller
Comment:
Deletions are marked like this. Additions are marked like this.
Line 6: Line 6:
   * reiterating on borked python-bx packaging    * reiterating on borked python-bx packaging - now in New Queue
Line 9: Line 9:
   * uploaded dependency https://github.com/BD2KGenomics/bd2k-python-lib as python-bd2k - now in NEW QUEUE    * uploaded dependency https://github.com/BD2KGenomics/bd2k-python-lib as python-bd2k - now in New Queue
   * ITP for Toil ist out
Line 11: Line 12:

---- /!\ '''Edit conflict - other version:''' ----
Line 14: Line 17:

---- /!\ '''Edit conflict - your version:''' ----

---- /!\ '''End of edit conflict''' ----

Notes from the 2017 Debian Med Sprint in Bucharest

Progress on meeting goals

  • Complete dependencies for Galaxy
    • reiterating on borked python-bx packaging - now in New Queue
  • Package Toil resource distributor for CWL workflows

/!\ Edit conflict - other version:

  • Updating cwltool & schema-salad: done. Sascha is adding cwl-runner via update-alternatives

  • packaging bcbio: MRC working on it and pybedtools dependency

/!\ Edit conflict - your version:

/!\ End of edit conflict

Project ideas

List of demands for development discussed/identified during the meeting

  • bash autocomplete from CWL tool descriptions
  • manual page generation from CWL tool descriptions

  • using acd2cwl to generate CWL descriptions for the EMBOSS tools