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 * Updating cwltool & schema-salad: done. Sascha is adding cwl-runner via update-alternatives

 * packaging bcbio: MRC working on it and pybedtools dependency

Notes from the 2017 Debian Med Sprint in Bucharest

Progress on meeting goals

  • Complete dependencies for Galaxy
    • reiterating on borked python-bx packaging
  • Package Toil resource distributor for CWL workflows

  • Updating cwltool & schema-salad: done. Sascha is adding cwl-runner via update-alternatives

  • packaging bcbio: MRC working on it and pybedtools dependency

Project ideas

List of demands for development discussed/identified during the meeting

  • bash autocomplete from CWL tool descriptions
  • manual page generation from CWL tool descriptions

  • using acd2cwl to generate CWL descriptions for the EMBOSS tools