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O. Sallou 1. Update clustal omega 2. Look for biomaj3 packaging 3. CWL discussions 4. Fixing bugs |
Debian Med 2017 Sprint
Location, Date
- January 12-16, 2017
This is an informal co-working and co-learning event, participants are welcome to attend on the days that work for their schedule.
Getting there
Splaiul Independenței 91-95 București 050095 România
https://goo.gl/maps/wCJfYCwSAEB2 https://www.rome2rio.com/s/My-hometown/Splaiul-Independen%C8%9Bei-91-Bucure%C8%99ti-Romania
Food at the venue
TBD
Food nearby
TBD
Participants
(tentative/final list of participants here before/after the sprint)
No |
Name |
confirmed |
booked accom. |
Organisation |
Living in |
Arrival at |
Departure at |
|
1 |
Michael R. Crusoe |
Yes |
N/A |
Common Workflow Language |
Bucharest, Romania |
- |
- |
|
2 |
Steffen Möller |
<moeller> |
- |
- |
Debian |
D |
- |
- |
3 |
Olivier Sallou |
<osallou> |
Yes |
- |
Debian |
FR |
12.1.17 |
16.1.17 |
4 |
Sascha Steinbiss |
<satta> |
Yes |
- |
Debian |
D |
Fri, 13.1.2017, 10:25 |
Sun, 15.1.2017, 20:10 |
5 |
Andreas Tille |
<tille> |
yes |
- |
Debian |
D |
Thu, 12.1.2017, 13:30 (arrival OTP) |
Mon, 16.1.2017, 14:15 (departure OTP) |
6 |
Anton Khodak |
Yes |
Yes |
Common Workflow Language |
Kyiv, Ukraine |
Wed, 11.1.2017, 16:20 |
Sun, 15.1.2017, 17:00 |
|
7 |
Gert Wollny |
gw.fosssdev@gmail.com (prospective: <gewo>) |
- |
- |
Debian |
Italy |
- |
- |
N |
Your name |
Your email address |
Confirmed? |
Booked accommodations? |
Your affiliation |
Your homebase |
Arrival day & time |
Departure day & time |
Agenda
TBD
Personal agendas
M. Crusoe:
- Getting existing CWL descriptions for tools inside packages, upstreaming them, and writing new descriptions.
Proof-of-concept for returning a Debian package name for a software identifier such as RRID (example: https://identifiers.org/rrid/RRID:SCR_001156 ) or bio.tools (example: https://bio.tools/tool/SignalP/version/4.1 )
It would also be great to see progress on packaging the various implementations https://github.com/common-workflow-language/common-workflow-language#implementations
S. Möller:
- Decide about how to present Debian Med on scientific conferences. Would very much like to implement a routine workflow dynamically on a cloud.
- Proceed on bio.tools integration with Matus and Jon
A. Tille:
- Packaging
- cytoscape
- freebayes
- gatk
- malt
- Mentoring about packaging
- Fixing bugs
- Updating existing packages
O. Sallou
1. Update clustal omega 2. Look for biomaj3 packaging 3. CWL discussions 4. Fixing bugs
Reports
Personal Reports
Acknowledgements
the sprint has been possible thanks to:
- the Faculty of Biology, University of Bucharest (Bucharest, Romania)
donations to the Debian project