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O. Sallou

1. Update clustal omega
2. Look for biomaj3 packaging
3. CWL discussions
4. Fixing bugs

Debian Med 2017 Sprint

Location, Date

  • January 12-16, 2017

This is an informal co-working and co-learning event, participants are welcome to attend on the days that work for their schedule.

Getting there

Splaiul Independenței 91-95
București 050095
România

https://goo.gl/maps/wCJfYCwSAEB2 https://www.rome2rio.com/s/My-hometown/Splaiul-Independen%C8%9Bei-91-Bucure%C8%99ti-Romania

Food at the venue

TBD

Food nearby

TBD

Participants

(tentative/final list of participants here before/after the sprint)

No

Name

Email

confirmed

booked accom.

Organisation

Living in

Arrival at

Departure at

1

Michael R. Crusoe

michael.crusoe@gmail.com

Yes

N/A

Common Workflow Language

Bucharest, Romania

-

-

2

Steffen Möller

<moeller>

-

-

Debian

 D

-

-

3

Olivier Sallou

<osallou>

Yes

-

Debian

 FR

12.1.17

16.1.17

4

Sascha Steinbiss

<satta>

Yes

-

Debian

D

Fri, 13.1.2017, 10:25

Sun, 15.1.2017, 20:10

5

Andreas Tille

<tille>

yes

-

Debian

D

Thu, 12.1.2017, 13:30 (arrival OTP)

Mon, 16.1.2017, 14:15 (departure OTP)

6

Anton Khodak

anton.khodak@ukr.net

Yes

Yes

Common Workflow Language

Kyiv, Ukraine

Wed, 11.1.2017, 16:20

Sun, 15.1.2017, 17:00

7

Gert Wollny

gw.fosssdev@gmail.com (prospective: <gewo>)

-

-

Debian

Italy

-

-

N

Your name

Your email address

Confirmed?

Booked accommodations?

Your affiliation

Your homebase

Arrival day & time

Departure day & time

Agenda

TBD

Personal agendas

M. Crusoe:

  1. Getting existing CWL descriptions for tools inside packages, upstreaming them, and writing new descriptions.
  2. Proof-of-concept for returning a Debian package name for a software identifier such as RRID (example: https://identifiers.org/rrid/RRID:SCR_001156 ) or bio.tools (example: https://bio.tools/tool/SignalP/version/4.1 )

It would also be great to see progress on packaging the various implementations https://github.com/common-workflow-language/common-workflow-language#implementations

S. Möller:

  1. Decide about how to present Debian Med on scientific conferences. Would very much like to implement a routine workflow dynamically on a cloud.
  2. Proceed on bio.tools integration with Matus and Jon

A. Tille:

  1. Packaging
    • cytoscape
    • freebayes
    • gatk
    • malt
  2. Mentoring about packaging
  3. Fixing bugs
  4. Updating existing packages

O. Sallou

1. Update clustal omega 2. Look for biomaj3 packaging 3. CWL discussions 4. Fixing bugs

Reports

Personal Reports

Acknowledgements

the sprint has been possible thanks to:


CategorySprint