Debian Med 2016 Sprint

We fill this place with Life!

hotel conference room it is nice out there

Location, Date

Google maps http://www.sinatur.dk trip adivsor

A meeting room will be available from the morning of Thu, Feb 4. There is a projector and multiple extension cords. WiFi is up to standard (new installation).

Getting there

Public transportation:

The venue is a few minutes walk from the bus stop.

Alternatives: Taxi from Lyngby to venue is around DKK100. Or the adventurous may enjoy a pleasant hike from Lyngby instead.

Food at the venue

lunch: DKK50-225 ranging from a sandwich to full buffet

dinner: 6-9pm (not Sunday), DKK175-425, depending of the number of dishes (1-5)

Food nearby

Restaurant Nybro Kro, http://www.nybrokro.dk/, Nybrovej 376 - 2800 Kgs. Lyngby. Tel. +45 4587 0149, 20min walk or a few minutes by bus from the venue

Frederiksdal Fribad, fribad.dk, Frederiksdal Badesti 1, 2830 Virum, +45 45 83 81 85, 10min walk from the venue (inquiry about opening hours sent by email, no answer yet indicating they may be closed for the winter)

Participants

(tentative/final list of participants here before/after the sprint)

No

Name

Email

confirmed

booked accom.

Organisation

Living in

Arrival at

Departure at

1

Andreas Tille

tille at d.o

yes

via DTU

Debian

Germany

Thu, landing 10:15

Mon

2

Steffen Möller

moeller at d.o

Debian, Uni Rostock

Germany

3

Jon Ison

jison@cbs.dtu.dk

yes

DTU, ELIXIR-DK

GB

Thu morning

Sun afternoon

4

Kristoffer Rapacki

rapacki@cbs.dtu.dk

yes

DTU, ELIXIR-DK

Denmark

Thu

Sun

5

Sascha Steinbiss

sascha at steinbiss.name

yes

via DTU

WTSI

UK

Thu, landing 15:05

Sun, flight departs 19:00

6

Michael R. Crusoe

crusoe@ucdavis.edu

yes

via DTU

UCDavis; Common Workflow Language

Romania

Thu after 18

Mon

7

Luca Clivio

luca.clivio@marionegri.it

yes

Mario Negri Institute for Pharmacologic Research

Italy

Thu

Sun

8

Kevin Murray

spam@kdmurray.id.au

yes

Via DTU

CPEB, Australian National University

Australia

Thu after 18

Sat

9

Ross Gammon

retail@the-gammons.net

Not required

Debian

Denmark

Sat

Sun

10

Ruben Undheim

ruben.undheim@gmail.com

yes

Via DTU

Debian

Norway

Thu

Sun

11

Fabian Klötzl

kloetzl@evolbio.mpg.de

yes

via DTU

MPI for Evolutionary Biology

Germany

Thu

Sun

12

Wojtek Dabrowski

dabrowskiw@rki.de

yes

Robert Koch Institute

Germany

Thu

Fri evening, take off 19:45

13

Matúš Kalaš

matus.kalas@uib.no

yes

booked by DTU

University of Bergen

Norway

Thu, landing 10:10

Sat morning, take off 09:15

14

Hervé Ménager

hmenager@pasteur.fr

yes

Institut Pasteur

France

Thu

Fri

15

Petter Reinholdtsen

pere at d.o

no

Debian

Norway

Thu

Sun

16

Ioan Eugen Stan

eu at ieugen dot ro

yes

AirBnB

Debian

România

Landing Thu 17:00

Tue Take-off 11:00

Agenda

(tentative/final agenda here before/after the sprint)

Personal agendas

Collaboration with ELIXIR

The Tools and Data Services Registry provides essential scientific and technical information about analytical tools and data services for bioinformatics. The registry is provided by a community effort coordinated by the Danish node of ELIXIR - the European infrastructure for biological information. Debian Med already includes packages for many key tools in bioinformatics and we’re working to forge a vibrant collaboration between ELIXIR and Debian Med to ensure:

To these ends, ELIXIR-DK would like to support this sprint by sponsoring an “extra day” (Thu - Fri) dedicated to registry work:

In practical terms, package registration should be straightforward given a sensible data sharing mechanism, which we can settle at the meeting. The time-consuming part is the annotation, so we’d like to focus on 10 attributes which are mandatory in the ELIXIR registry. This includes terms from the EDAM vocabulary to describe the package “topic” (broad scientific category), “operation” (exactly what a tool does) and “data” (input and output type of data) which can also include “format” (specific data formats): EDAM developers will be on-hand to help with this.

Any questions? For enquiries about venue, hotel etc. please mail Myhanh Nguyen. For technical enquries please mail registry@elixir-dk.org, alternatively mail Jon Ison and Kristoffer Rapacki directly.

Reports

(pointers to communication about the sprint)

Personal Reports

Andreas Tille

Acknowledgements

the sprint has been possible thanks to:


CategorySprint