Debian Med 2016 Sprint

We fill this place with Life!

hotel conference room it is nice out there

Location, Date

Google maps http://www.sinatur.dk trip adivsor

Participants

(tentative/final list of participants here before/after the sprint)

No

Name

Email

confirmed

booked accom.

Organisation

Living in

Arrival at

Departure at

1

Andreas Tille

tille at d.o

Debian

Germany

Thu

Mon

2

Steffen Möller

moeller at d.o

Debian, Uni Rostock

Germany

3

Jon Ison

jison@cbs.dtu.dk

yes

DTU, ELIXIR-DK

GB

Thu

Sun

4

Kristoffer Rapacki

rapacki@cbs.dtu.dk

yes

DTU, ELIXIR-DK

Denmark

Thu

Sun

5

Sascha Steinbiss

sascha at steinbiss.name

yes

via DTU

WTSI

UK

Thu

Sun

6

Michael R. Crusoe

crusoe@ucdavis.edu

yes

UCDavis; Common Workflow Language

Romania

Thu

Mon

7

Luca Clivio

luca.clivio@marionegri.it

Mario Negri Institute for Pharmacologic Research

Italy

Thu

Sun

8

Kevin Murray

spam@kdmurray.id.au

yes

CPEB, Australian National University

Australia

Thu

Sat

9

Ross Gammon

retail@the-gammons.net

Not required

Debian

Denmark

Sat

Sun

10

Ruben Undheim

ruben.undheim@gmail.com

Debian

Norway

Thu/Fri

Sun

11

Fabian Klötzl

kloetzl@evolbio.mpg.de

MPI for Evolutionary Biology

Germany

Thu

Sun

Agenda

(tentative/final agenda here before/after the sprint)

Collaboration with ELIXIR

The Tools and Data Services Registry provides essential scientific and technical information about analytical tools and data services for bioinformatics. The registry is provided by a community effort coordinated by the Danish node of ELIXIR - the European infrastructure for biological information. Debian Med already includes packages for many key tools in bioinformatics and we’re working to forge a vibrant collaboration between ELIXIR and Debian Med to ensure:

To these ends, ELIXIR-DK would like to support this sprint by sponsoring an “extra day” (Thu - Fri) dedicated to registry work:

In practical terms, package registration should be straightforward given a sensible data sharing mechanism, which we can settle at the meeting. The time-consuming part is the annotation, so we’d like to focus on 10 attributes which are mandatory in the ELIXIR registry. This includes terms from the EDAM vocabulary to describe the package “topic” (broad scientific category), “operation” (exactly what a tool does) and “data” (input and output type of data) which can also include “format” (specific data formats): EDAM developers will be on-hand to help with this.

Any questions? For enquiries about venue, hotel etc. please mail Myhanh Nguyen. For technical enquries please mail registry@elixir-dk.org, alternatively mail Jon Ison and Kristoffer Rapacki directly.

Reports

(pointers to communication about the sprint)

Acknowledgements

the sprint has been possible thanks to:


CategorySprint