[Show "Revision History"] [Show "General Page Infos"] [Show "Page hits and edits"]

Revision History

Showing page edit history entries from 1 to 181 out of 181 entries total.

# Date Size Editor Comment Action
181 2009-08-24 08:34:40 15363 to previous AndreasTille Removed available packages as well as last microbio.wml column view
180 2009-08-24 08:19:50 16300 to previous AndreasTille Removed available packages as well as last microbio.wml column view
179 2009-08-24 08:17:33 16541 to previous AndreasTille Removed available packages as well as last microbio.wml column view
178 2009-08-24 08:14:51 16747 to previous AndreasTille Removed available packages as well as last microbio.wml column view
177 2009-08-24 08:11:07 16912 to previous AndreasTille Removed available packages as well as last microbio.wml column view
176 2009-08-24 08:06:26 17531 to previous AndreasTille Removed available packages as well as last microbio.wml column view
175 2009-08-24 07:54:17 17659 to previous AndreasTille Removed available packages as well as last microbio.wml column view
174 2009-08-24 07:47:50 18336 to previous AndreasTille Removed available packages as well as last microbio.wml column view
173 2009-03-16 03:31:15 18715 to previous anonymous converted to 1.6 markup view
172 2008-04-03 18:05:12 18444 to previous FrédéricLehobey   view
171 2008-02-08 19:31:22 18439 to previous RudiCilibrasi   view
170 2008-01-15 01:13:47 18277 to previous CharlesPlessy snoReport: Computational identification of snoRNAs with unknown targets view
169 2007-07-25 12:48:47 18138 to previous CharlesPlessy TFAM: the tRNA identity classifier system view
168 2007-07-25 11:23:47 17987 to previous CharlesPlessy StatSigMA: Statistical Significance of Multiple Alignments view
167 2007-07-23 06:38:23 17824 to previous CharlesPlessy automated method that classifies Hox proteins in their groups of homology view
166 2007-06-18 02:00:50 17707 to previous LucaBrivio added tacg view
165 2007-06-13 04:48:30 17638 to previous CharlesPlessy parallel Maximum Likelihood-based inference of large phylogenetic trees. view
164 2007-06-01 00:50:51 17519 to previous CharlesPlessy Fast and effective prediction of microRNA/target duplexes view
163 2007-05-31 13:23:07 17348 to previous CharlesPlessy   view
162 2007-05-31 13:22:24 17348 to previous CharlesPlessy target prediction program based on mRNA sequence complementarity view
161 2007-05-31 12:10:19 17218 to previous CharlesPlessy dynamic programming to identify hairpin structures view
160 2007-05-31 11:53:13 17047 to previous CharlesPlessy Predict whether your hairpin sequence is a likely microRNA. view
159 2007-05-31 11:49:50 16914 to previous CharlesPlessy Creating a miRNA category view
158 2007-05-31 05:35:06 16740 to previous CharlesPlessy EMBOSS is now in Debian view
157 2007-04-25 10:47:54 16466 to previous CharlesPlessy Search for H/ACA snoRNA genes in a genomic sequence view
156 2007-04-25 10:45:37 16354 to previous CharlesPlessy   view
155 2007-04-25 10:44:55 16345 to previous CharlesPlessy Search for C/D box methylation guide snoRNA genes in a genomic sequence view
154 2007-04-25 10:22:06 16246 to previous CharlesPlessy Search for tRNA genes in genomic sequence view
153 2007-04-25 10:18:43 16085 to previous CharlesPlessy   view
152 2007-04-18 14:20:58 16088 to previous CharlesPlessy automated selection of orthologous genes view
151 2007-04-10 06:26:40 15970 to previous CharlesPlessy predict genes in anonymous genomic sequences view
150 2007-04-10 06:09:06 15854 to previous CharlesPlessy ORF Finder (Open Reading Frame Finder) view
149 2007-03-30 03:00:20 15730 to previous CharlesPlessy Jalview is a multiple alignment editor written in Java. view
148 2007-02-03 01:47:35 15660 to previous CharlesPlessy found unofficial packages view
147 2007-01-28 23:14:59 15635 to previous CharlesPlessy graphical representations of raw DNA sequences. view
146 2007-01-24 07:30:43 15479 to previous CharlesPlessy structure analysis based on aligned RNAs view
145 2007-01-19 12:28:07 15309 to previous CharlesPlessy RNA motif search program view
144 2007-01-19 12:16:11 15235 to previous CharlesPlessy finds RNA structures in a database view
143 2007-01-19 12:13:42 15111 to previous CharlesPlessy you really need a substantial computing cluster to do any serious work with it view
142 2007-01-19 12:03:44 15018 to previous CharlesPlessy searching DNA sequence databases for RNA structure and sequence similarities. view
141 2007-01-19 12:02:22 14945 to previous CharlesPlessy software package for non-coding RNA homology searches view
140 2006-11-27 05:35:40 14856 to previous CharlesPlessy typo view
139 2006-11-25 12:35:23 14855 to previous CharlesPlessy C-Program to predict CRMs based on conservation and overrepresentation view
138 2006-11-03 09:40:51 14705 to previous CharlesPlessy discovery of conserved elements using a non-alignment based approach view
137 2006-11-03 09:34:18 14531 to previous CharlesPlessy algorithm for finding genomic targets for microRNAs. view
136 2006-11-03 03:43:29 14390 to previous CharlesPlessy package for screening of guide and orphan snoRNA genes view
135 2006-11-02 15:02:45 14248 to previous CharlesPlessy Combinatorial Extension view
134 2006-11-01 13:46:23 14135 to previous CharlesPlessy explanations view
133 2006-10-21 01:03:08 13314 to previous CharlesPlessy Multiple Em for Motif Elucidation in Rna's Including secondary Structures view
132 2006-10-20 10:57:33 13180 to previous CharlesPlessy ESPript, Easy Sequencing in Postscript view
131 2006-10-17 07:58:29 12997 to previous CharlesPlessy Computer prediction of CpG islands view
130 2006-09-17 14:35:24 12859 to previous CharlesPlessy   view
129 2006-09-16 01:15:49 12753 to previous CharlesPlessy dna2pep is its name in command line view
128 2006-09-03 04:06:56 12622 to previous CharlesPlessy web interface to the popular EMBOSS software package view
127 2006-08-29 07:02:37 12549 to previous CharlesPlessy CONditional TRAining for RNA Secondary Structure Prediction view
126 2006-08-29 06:56:27 12427 to previous CharlesPlessy   view
125 2006-08-28 23:36:53 12454 to previous CharlesPlessy general-purpose Gibbs sampler for finding motifs view
124 2006-08-15 10:57:50 12375 to previous CharlesPlessy short linear motif discovery view
123 2006-08-14 06:50:56 12266 to previous CharlesPlessy abstraction maps structures to a tree-like domain of shapes view
122 2006-08-14 06:47:29 12088 to previous CharlesPlessy Reorganisation view
121 2006-08-14 06:44:32 11960 to previous CharlesPlessy   view
120 2006-08-14 06:38:15 11963 to previous CharlesPlessy Prediction of Melting Profiles for Nucleic Acids view
119 2006-08-11 01:45:40 11776 to previous CharlesPlessy Analyzing and Visualizing Evolutionary Data view
118 2006-08-11 01:35:27 11535 to previous CharlesPlessy   view
117 2006-08-10 03:26:18 11483 to previous CharlesPlessy   view
116 2006-08-09 12:56:35 11437 to previous CharlesPlessy   view
115 2006-08-09 09:53:25 11409 to previous CharlesPlessy System for Easy Analysis of Lots of Sequences view
114 2006-07-28 10:30:30 11202 to previous CharlesPlessy now packaged view
113 2006-07-18 02:55:06 11075 to previous CharlesPlessy tools that can be used to discover possible regulatory cis-elements view
112 2006-07-16 06:50:19 10950 to previous CharlesPlessy motif-finding algorithm view
111 2006-07-16 06:34:22 10802 to previous CharlesPlessy pattern-driven algorithm for motif finding in DNA sequences view
110 2006-07-15 04:13:11 10692 to previous CharlesPlessy Moved multiple aligmnent on a separate page view
109 2006-07-15 02:58:36 12840 to previous CharlesPlessy cleaning multiple alignments from unstable blocks view
108 2006-07-15 02:46:05 12745 to previous CharlesPlessy contralign is pairwise view
107 2006-07-15 01:59:18 12745 to previous CharlesPlessy true homepage view
106 2006-07-14 12:45:14 12746 to previous CharlesPlessy web-tool to explore the quantitative relationships between amino acids view
105 2006-07-14 12:21:39 12618 to previous CharlesPlessy Protein Mapping and Comparison Tool view
104 2006-07-13 06:35:35 12506 to previous CharlesPlessy   view
103 2006-07-13 06:25:08 12508 to previous CharlesPlessy new packages view
102 2006-07-13 06:21:21 12554 to previous CharlesPlessy Found thanks to http://en.wikipedia.org/wiki/Sequence_alignment_software view
101 2006-07-13 06:08:54 12427 to previous CharlesPlessy Found thanks to http://en.wikipedia.org/wiki/Sequence_alignment_software view
100 2006-07-10 07:01:19 12311 to previous CharlesPlessy   view
99 2006-07-10 06:57:44 12309 to previous CharlesPlessy PROTTEST: Selection of best-fit models of protein evolution view
98 2006-07-04 15:27:10 12188 to previous CharlesPlessy Additions to microbio.wml view
97 2006-07-04 08:11:10 12181 to previous CharlesPlessy structural alignment of RNA sequences with similarity < 40% view
96 2006-07-03 13:13:23 12089 to previous CharlesPlessy new programs in main view
95 2006-07-03 13:02:54 12154 to previous CharlesPlessy Alignment of weakly-conserved non-coding DNA sequence view
94 2006-06-24 04:48:30 12071 to previous CharlesPlessy DNA local alignment (DNA similarity search) of genomic sequences view
93 2006-06-20 05:08:01 12006 to previous CharlesPlessy ddbRNA: detection of conserved secondary structures in multiple alignments. view
92 2006-06-17 05:36:48 11800 to previous CharlesPlessy package of two programs, ariadne and prospero, that compare protein sequences view
91 2006-06-17 05:15:19 11609 to previous CharlesPlessy (pairwise) sequence alignment algorithms view
90 2006-06-17 04:55:21 11472 to previous CharlesPlessy another fasta program view
89 2006-06-17 04:48:36 11388 to previous CharlesPlessy command line program for pairwise alignment from the fasta package view
88 2006-06-16 15:09:24 11304 to previous CharlesPlessy viewing/manipulating the output from pairwise alignment programs such as blastz view
87 2006-06-16 14:55:04 11213 to previous CharlesPlessy Implementation of the Smith-Waterman algorithm with Gotoh's improvement view
86 2006-06-16 14:47:09 11127 to previous CharlesPlessy you can blast 2 seqs with blastall -p bl2seq view
85 2006-06-16 05:37:44 11018 to previous CharlesPlessy program for visualizing local alignments between two sequences view
84 2006-06-16 05:28:12 10891 to previous CharlesPlessy rearrangement view
83 2006-06-16 05:22:15 10911 to previous CharlesPlessy SIM finds k best non-intersecting alignments between two sequences view
82 2006-06-15 07:23:27 10700 to previous CharlesPlessy align a spliced DNA sequence to an unspliced genomic sequence view
81 2006-06-14 14:06:03 10527 to previous CharlesPlessy The Sequence Manipulation Suite view
80 2006-06-14 11:58:17 10435 to previous CharlesPlessy Partial Order Alignment view
79 2006-05-30 05:55:44 10352 to previous CharlesPlessy DME is a program that discovers transcription factor binding site motifs. view
78 2006-05-30 05:53:00 10250 to previous CharlesPlessy New subsection view
77 2006-05-26 00:44:02 10078 to previous CharlesPlessy The author pointed me out which file contained the sources view
76 2006-05-15 12:09:09 10083 to previous CharlesPlessy pseg: mask low-complexity strings view
75 2006-05-15 11:43:36 9955 to previous CharlesPlessy xnu is an utility to replace low-complexity parts of a sequence by a string of X view
74 2006-05-15 06:46:03 9842 to previous CharlesPlessy CRITICA (Coding Region Identification Tool Invoking Comparative Analysis) view
73 2006-05-15 06:35:59 9718 to previous CharlesPlessy discovering regulatory sites in a collection of DNA sequences view
72 2006-05-14 14:39:49 9591 to previous CharlesPlessy An application for the simulation of sequence evolution along phylogenetic trees view
71 2006-05-14 14:01:42 9410 to previous CharlesPlessy   view
70 2006-05-14 14:00:22 9408 to previous CharlesPlessy Treeplot is a conversion tool view
69 2006-05-14 13:41:24 9220 to previous CharlesPlessy Treevolve: simulation of the evolution of DNA sequences view
68 2006-05-09 04:07:18 9026 to previous CharlesPlessy CONSEL: for assessing the confidence of phylogenetic tree selection view
67 2006-05-08 00:50:28 8910 to previous CharlesPlessy CONditionally TRained Alignment of Amino Acid Sequences view
66 2006-05-07 15:52:04 8784 to previous SteffenMoeller added refs to pkg-emboss view
65 2006-05-07 14:49:40 8691 to previous CharlesPlessy PrIMETV is a program that can visualize tree-within-tree phenomena view
64 2006-05-07 14:37:47 8496 to previous CharlesPlessy   view
63 2006-05-07 11:26:11 8558 to previous CharlesPlessy   view
62 2006-05-05 05:54:16 8389 to previous CharlesPlessy some packages are available on Mentors view
61 2006-05-03 02:57:07 8331 to previous CharlesPlessy ProAlign, a probabilistic multiple alignment program view
60 2006-05-03 02:50:34 8219 to previous CharlesPlessy Handel: an evolutionary model-based Statistical Alignment package. view
59 2006-04-30 15:06:10 8044 to previous CharlesPlessy I intend to package probcons view
58 2006-04-30 12:12:54 8035 to previous CharlesPlessy GLAM: Gapless Local Alignment of Multiple sequences view
57 2006-04-29 13:40:09 7923 to previous CharlesPlessy I intend to package kalign. view
56 2006-04-29 11:23:00 7892 to previous CharlesPlessy Wrong ITP view
55 2006-04-29 10:38:56 7892 to previous CharlesPlessy cosmetics view
54 2006-04-23 12:56:41 7786 to previous CharlesPlessy Vienna RNA Package: RNA Secondary Structure Prediction and Comparison view
53 2006-04-23 12:48:25 7635 to previous CharlesPlessy RNAz - predicting structural noncoding RNAs view
52 2006-04-23 11:29:45 7476 to previous CharlesPlessy Sequence to Structure (S2S) : display, manipulate and interconnect RNA data view
51 2006-04-22 09:37:31 7345 to previous CharlesPlessy delila: a software suite written in pascal view
50 2006-04-22 08:47:20 7219 to previous CharlesPlessy   view
49 2006-04-22 08:43:23 7224 to previous CharlesPlessy TreeDyd: seems to do many things, but where are the sources? view
48 2006-04-22 04:55:45 7117 to previous CharlesPlessy mumsa: quality analysis of multiple sequence alignments view
47 2006-04-22 04:52:29 7020 to previous CharlesPlessy kalign, kalignvu: tools to create and visualise multiple alignments view
46 2006-04-22 03:56:24 6852 to previous CharlesPlessy marna: takes the secondary structure into account view
45 2006-04-22 03:02:26 6667 to previous CharlesPlessy r8s: to calculate rates (r-eight-s) of evolution. view
44 2006-04-21 11:00:21 6560 to previous CharlesPlessy STRA: a multiple alignment viewer written in java. view
43 2006-04-15 05:39:37 6548 to previous CharlesPlessy   view
42 2006-04-10 12:29:09 6513 to previous CharlesPlessy Weblogo: to create sequence logos. view
41 2006-04-10 00:48:12 6414 to previous CharlesPlessy Now that we have plenty, let's benchmark! view
40 2006-04-10 00:30:30 6284 to previous CharlesPlessy I intend to package dialign. view
39 2006-04-09 03:58:18 6258 to previous CharlesPlessy Adding SSAHA2 for information (unpackageable) view
38 2006-04-03 04:17:31 6104 to previous CharlesPlessy redundant line removed view
37 2006-04-03 04:16:39 6188 to previous CharlesPlessy malign : an old alignment program view
36 2006-03-28 14:52:21 6048 to previous CharlesPlessy dialign-t is a recent re-implementation of dialign view
35 2006-03-28 14:36:22 5941 to previous CharlesPlessy oops, dialign is free! view
34 2006-03-24 04:20:58 5917 to previous CharlesPlessy DNPTrapper : an assembly program, focused on finishing. view
33 2006-03-17 16:21:54 5799 to previous CharlesPlessy The new version of seaview depends on a non-free lib :( view
32 2006-03-17 10:11:58 5646 to previous CharlesPlessy autoseq : a free C++ basecaller view
31 2006-03-16 05:53:56 5498 to previous CharlesPlessy three more programs for multiple alignment view
30 2006-03-15 11:57:13 5287 to previous CharlesPlessy blast2html: just another parser view
29 2006-03-15 11:48:22 5121 to previous CharlesPlessy adding jemboss and pise view
28 2006-03-15 11:29:32 4747 to previous CharlesPlessy oops, typo... sorry view
27 2006-03-15 11:27:22 4746 to previous CharlesPlessy adding blast, wublast and ssaha, reorganising database querying programs. view
26 2006-03-15 11:11:16 4494 to previous CharlesPlessy adding two parsers for Blast outputs view
25 2006-03-15 03:33:36 4203 to previous CharlesPlessy Wise2 : a software package focused on sequence comparisons. view
24 2006-03-14 09:06:12 4040 to previous CharlesPlessy ACANA looks interesting but I can not find the sources view
23 2006-03-13 02:26:47 3946 to previous CharlesPlessy forgot an url... view
22 2006-03-13 02:24:48 3908 to previous CharlesPlessy Adding exonerate (pairwise alignments) to the list view
21 2006-03-02 07:32:32 3798 to previous CharlesPlessy amap and probcons : public domain tools for multiple alignment of protein seqs view
20 2006-03-02 04:39:03 3476 to previous CharlesPlessy   view
19 2006-02-25 04:22:16 3452 to previous CharlesPlessy   view
18 2006-02-21 14:59:40 3244 to previous CharlesPlessy   view
17 2006-02-21 06:45:48 2768 to previous CharlesPlessy   view
16 2006-02-14 07:18:38 2641 to previous CharlesPlessy   view
15 2006-02-14 07:04:26 2332 to previous CharlesPlessy   view
14 2006-02-14 06:50:22 2170 to previous CharlesPlessy   view
13 2006-02-11 10:34:04 2008 to previous CharlesPlessy   view
12 2006-02-11 07:54:30 2022 to previous CharlesPlessy   view
11 2006-02-11 06:38:34 2007 to previous CharlesPlessy   view
10 2006-02-11 06:08:52 1643 to previous CharlesPlessy   view
9 2006-02-11 05:49:04 1371 to previous CharlesPlessy   view
8 2006-02-10 02:12:45 1303 to previous CharlesPlessy   view
7 2006-02-10 01:54:50 1187 to previous CharlesPlessy   view
6 2006-02-08 04:58:15 1147 to previous CharlesPlessy   view
5 2006-02-08 04:57:41 1129 to previous CharlesPlessy   view
4 2006-02-08 04:52:56 1087 to previous CharlesPlessy   view
3 2006-02-01 00:58:13 884 to previous CharlesPlessy   view
2 2006-01-31 15:07:20 363 to previous CharlesPlessy   view
1 2006-01-31 15:06:54 405 CharlesPlessy   view