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[[Helen Faulkner's talk http://dc5video.debian.net/2005-07-17/Using_Debian_for_science_research-Helen_Faulkner.mpeg]] at [wiki:Self:DebConf5Talks ["Debconf5"]]. |
[Helen Faulkner's talk http://dc5video.debian.net/2005-07-17/Using_Debian_for_science_research-Helen_Faulkner.mpeg] at [wiki:Self:DebConf5Talks Debconf5]. == Some ideas emerging from Helen's talk == (please complete) * The dedicated mailing list [http://lists.debian.org/debian-science/ debian-science] has been created [http://lists.debian.org/debian-science/2005/07/msg00000.html thanks to Pascal Hakim]. * DebianScience could also be a [wiki:Self:CustomDebian CDD project]. * It could also be turned into a ["LiveCD"]. [http://dirk.eddelbuettel.com/quantian/ Quantian] already does much of this. * Development frameworks (should be painless): * kdevelop for KDE * Anjuta for Gnome * Is Octave really usable? The main differences or missing features with respect to Matlab should be documented. * Easy and simple tools to plot data (possibly separate by scriptable and/or gui, plotting for papers vs for 'exploring' data) * gnuplot * python is good at that * labplot is a nice gui plotter that handles 3D data * openoffice.org calc can be used to plot 2D data * [http://plasma-gate.weizmann.ac.il/Grace/ xmgrace] (from xmgr/ace) seems popular here for 2D publication-quality plotting * GNU R is a free implementation of the S programming language for statistical analysis. It is very useful for data visualization and other computational science tasks. * Necessity of a good Fortran integration * Useful tools for writing papers - word processing and LaTeX * kile (KDE late editor) * openoffice.org (office suite - good but not 100% ["MSOffice"] filters) * Useful mathematical libraries * FFTW and ["FFTW3"] (Fast Fourier Transforms) * ATLAS and LAPACK (Linear Algebra) * GSL (special functions, pseudorandom numbers, optimizers, solvers, etc. etc.) == Links already inside Debian project == * DebianScienceDebianLinks == Outside links related to science or scientific projects == * DebianScienceOtherLinks == Efforts that could be undertaken == * DebianScienceDebtags * ["DebianScienceCDD"] * ["DebianScienceLiveCD"] == Thematic links == * DebianScienceBiology * DebianScienceChemistry * DebianScienceConferenceTools * DebianScienceDataPlotting * DebianScienceMathematics * DebianSciencePhysics * DebianSciencePublishing (many still missing) == Other contributions == (some thoughts added by smoe): Independent from Helen's presentations that I cannot access at the moment there is * A technical side of things * Open Hardware for data aquisition * Linux Lab Project * Huge amount of software * End user applications * Kstars / general astronomy * K12 / Education * Debian-Junior * Things working in the background * Parallel computing * Cluster software (Sun Gridware, Torque, Condor, LSF) * Grid software (Globus, [http://www.nordugrid.org wiki:Self:NorduGrid]) * ["Boinc"] (see also {alioth:pkg-boinc}) * MPI / PVM * Statistics * [http://www.r-project.org R] * Maple/Octave * A community side of things * This wiki page * Debian at large * Others * This |
The goal for this page is to collect material around the ideas discussed at [Helen Faulkner's talk http://dc5video.debian.net/2005-07-17/Using_Debian_for_science_research-Helen_Faulkner.mpeg] at [wiki:?DebConf5Talks Debconf5].
Some ideas emerging from Helen's talk
(please complete)
The dedicated mailing list [http://lists.debian.org/debian-science/ debian-science] has been created [http://lists.debian.org/debian-science/2005/07/msg00000.html thanks to Pascal Hakim].
DebianScience could also be a [wiki:CustomDebian CDD project].
It could also be turned into a ["LiveCD"]. [http://dirk.eddelbuettel.com/quantian/ Quantian] already does much of this.
- Development frameworks (should be painless):
- kdevelop for KDE
- Anjuta for Gnome
- Is Octave really usable? The main differences or missing features with respect to Matlab should be documented.
- Easy and simple tools to plot data (possibly separate by scriptable and/or gui, plotting for papers vs for 'exploring' data)
- gnuplot
- python is good at that
- labplot is a nice gui plotter that handles 3D data
- openoffice.org calc can be used to plot 2D data
[http://plasma-gate.weizmann.ac.il/Grace/ xmgrace] (from xmgr/ace) seems popular here for 2D publication-quality plotting
- GNU R is a free implementation of the S programming language for statistical analysis. It is very useful for data visualization and other computational science tasks.
- Necessity of a good Fortran integration
- Useful tools for writing papers - word processing and LaTeX
- kile (KDE late editor)
- openoffice.org (office suite - good but not 100% ["MSOffice"] filters)
- Useful mathematical libraries
- FFTW and ["FFTW3"] (Fast Fourier Transforms)
- ATLAS and LAPACK (Linear Algebra)
- GSL (special functions, pseudorandom numbers, optimizers, solvers, etc. etc.)
Links already inside Debian project
?DebianScienceDebianLinks
Outside links related to science or scientific projects
?DebianScienceOtherLinks
Efforts that could be undertaken
?DebianScienceDebtags
- ["DebianScienceCDD"]
- ["DebianScienceLiveCD"]
Thematic links
?DebianScienceBiology
?DebianScienceChemistry
?DebianScienceConferenceTools
?DebianScienceDataPlotting
?DebianScienceMathematics
?DebianSciencePhysics
?DebianSciencePublishing
(many still missing)
Other contributions
(some thoughts added by smoe):
Independent from Helen's presentations that I cannot access at the moment there is
- A technical side of things
- Open Hardware for data aquisition
- Linux Lab Project
- Huge amount of software
- End user applications
- Kstars / general astronomy
- K12 / Education
- Debian-Junior
- Things working in the background
- Parallel computing
- Cluster software (Sun Gridware, Torque, Condor, LSF)
Grid software (Globus, [http://www.nordugrid.org wiki:?NorduGrid])
- ["Boinc"] (see also {alioth:pkg-boinc})
- MPI / PVM
- Statistics
- Maple/Octave
- Parallel computing
- End user applications
- A community side of things
- This wiki page
- Debian at large
- Others
- This