7528
Comment: Add transfig
|
7474
|
Deletions are marked like this. | Additions are marked like this. |
Line 56: | Line 56: |
* See also [http://www.debian.org/devel/debian-med/doc debian-med/doc] Dia is an editor for diagrams, graphs, charts etc. |
* See also [http://www.debian.org/devel/debian-med/doc debian-med/doc] |
Known users from DebianScience listed in parenthesis.
[http://cdd.alioth.debian.org/science/tasks/typesetting.html Sentinel page]
Typesetting
Editors
emacs ([http://lists.debian.org/debian-science/2005/08/msg00002.html Andre Lehovich], [http://lists.debian.org/debian-science/2005/08
xemacs ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])
bluefish ([http://lists.debian.org/debian-science/2005/08/msg00006.html Kenward Vaughan]) /msg00170.html Filippo Rusconi], [http://lists.debian.org/debian-science/2005/08/msg00005.html Enrico Zini])
kile ([http://lists.debian.org/debian-science/2005/07/msg00006.html Helen Faulkner], [http://lists.debian.org/debian-science/2005/08/msg00017.html JD Rogers])
Typesetting tools already packaged in Debian
TeX/LaTeX
LaTeX ([http://lists.debian.org/debian-science/2005/07/msg00006.html Helen Faulkner], [http://lists.debian.org/debian-science/2005/08/msg00002.html Andre Lehovich], [http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz], [http://lists.debian.org/debian-science/2005/08/msg00170.html Filippo Rusconi])
pdflatex ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])
rubber ([http://lists.debian.org/debian-science/2005/08/msg00035.html Gorjanc Gregor], [http://lists.debian.org/debian-science/2005/08/msg00032.html Jukka Suomela])
- TeX
- tex4ht
texi2dvi ([http://lists.debian.org/debian-science/2005/08/msg00035.html Gorjanc Gregor])
- texify
Wysiwyg
openoffice.org ([http://lists.debian.org/debian-science/2005/07/msg00006.html Helen Faulkner], [http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz], [http://lists.debian.org/debian-science/2005/08/msg00008.html Carlo Segre], [http://lists.debian.org/debian-science/2005/08/msg00006.html Kenward Vaughan], [http://lists.debian.org/debian-science/2005/08/msg00005.html Enrico Zini])
scribus ([http://lists.debian.org/debian-science/2005/08/msg00001.html Yaroslav Halchenko])
[http://packages.debian.org/unstable/editors/lyx LyX] ([http://www.lyx.org/ upstream]) LyX is an almost WYSIWYG-frontend for LaTeX. It makes the power and typesetting quality of LaTeX available for people who are used to word processors.
Viewers
gv ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])
xpdf ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])
Useful for slides and posters
[:DebianScience/ConferenceTools#slides:] Tools for producing slides
[:DebianScience/ConferenceTools#posters:] Tools for producing posters
Emacs extensions for LaTeX
[http://packages.debian.org/stable/auctex AUCTeX] ([http://www.gnu.org/software/auctex/ upstream]) Integrated document editing environment for TeX etc. One component of AUCTeX that LaTeX users will find attractive is: [http://packages.debian.org/stable/preview-latex-style preview-latex], a combination of folding and in-source previewing that provides true "What You See Is What You Get" experience in your sourcebuffer, while letting you retain full control.
[http://packages.debian.org/stable/whizzytex whizzytex] ([http://lists.debian.org/debian-science/2005/08/msg00002.html Andre Lehovich])
- reftex mode - included with emacs helps with cross references.
- flyspell mode - on the fly spell checking - included with emacs
[ftp://ftp.tex.ac.uk/tex-archive/support/ite/index.html ite] ([http://bugs.debian.org/492651 ITP:#492651]) Position figure labels interactively. [http://sites.google.com/site/ralexowen/debian-packages Preliminary Package]
Vector diagrams
[http://packages.debian.org/unstable/graphics/dia dia] [http://live.gnome.org/Dia upstream] Dia is an editor for diagrams, graphs, charts etc.
[http://packages.debian.org/unstable/graphics/xfig xfig] Facility for Interactive Generation of figures under X11
[http://packages.debian.org/unstable/graphics/transfig transfig] Utilities for converting XFig figure files
Others
See also [http://www.debian.org/devel/debian-med/doc debian-med/doc]
Publishing tools that could be considered for inclusion in Debian
[http://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=use..typesetting;users=debian-science@lists.debian.org Packages being worked on].
epsmerge ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])
pyblink (already packaged by [http://lists.debian.org/debian-science/2005/08/msg00001.html Yaroslav Halchenko]): it is for those who have to struggle in OO and write anything which includes bibliographies. pyblink would help you to interact OO with pybliographic and have references done in easier way.
Sweave [http://www.ci.tuwien.ac.at/~leisch/Sweave/ upstream] ([http://lists.debian.org/debian-science/2005/08/msg00035.html Gorjanc Gregor]) very powerful combination of LaTeX and R in one file. This is based on Noweb ideology.
yzis [http://www.yzis.org/ upstream] For vi-like users.
Drawing Feynman diagrams
?FeynmanGraph [http://www.physics.odu.edu/~musatov/ upstream].
?JaxoDraw [http://jaxodraw.sourceforge.net/ upstream]
Bibliographies
Managing bibliographies
[http://packages.debian.org/sid/jabref jabref] ?JabRef is a GUI to manage BibTeX databases, the standard LaTeX bibliography reference format. ?JabRef is built to be platform independent (requires Java 1.5). It merges and extends the functionalities of ?BibKeeper (Morten O. Alver) and JBibtexManager (Nizar Batada).
[http://packages.qa.debian.org/s/skribe.html skribe] [http://www-sop.inria.fr/mimosa/fp/Skribe/ upstream] ([http://lists.debian.org/debian-science/2005/08/msg00171.html Brett Viren])
[http://packages.debian.org/unstable/text/bibutils bibutils] ([http://www.scripps.edu/~cdputnam/software/bibutils/ upstream]) Convert between the following bibliographic data formats: BibTeX, COPAC, ?EndNote refer, ?EndNote XML, Pubmed XML, ISI web of science, US Library of Congress MODS XML, RIS, and Word 2007 bibliography.
[http://packages.debian.org/unstable/kde/kbibtex kbibtex] ([http://www.unix-ag.uni-kl.de/~fischer/kbibtex/ upstream] BibTeX editor for KDE
[http://packages.debian.org/unstable/gnome/pybliographer pybliographer] ([http://www.pybliographer.org/ pybliographer] tool for manipulating bibliographic databases
[http://packages.debian.org/unstable/gnome/referencer referencer] ([http://icculus.org/referencer/index.html upstream]) Referencer is a GNOME application to organise documents or references, and ultimately generate a BibTeX bibliography file.
Tools for handling bibliographies that could be considered for inclusion in Debian
Name |
Task |
Licence |
Package |
[http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=69446 Biomail] [http://biomail.sourceforge.net/biomail/ upstream] |
Surveying |
GPL |
|
[http://refdb.sourceforge.net/ RefDB] |
Database |
GPL |
|
[http://www.cs.usyd.edu.au/~tapted/bib2endnote.html bib2endnote] |
Converter |
GPLv2 |
depens on Java |
[http://bioinformatics.org/librarian/ Librarian] |
PDF article indexing |
GPL |
depends on php/mysql/apache |
[http://gpapers.org/ gPapers] |
Bibliography management |
GPL |
depends on python |