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Comment: Add diploma
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## Auto-converted by kwiki2moinmoin v2005-10-07
== Publishing tools already packaged in Debian ==
 * Kyle
 * Lyx
 * !TeX/!LaTeX
 * !TeXmacs
## page was renamed from DebianSciencePublishing
Known users from DebianScience listed in parenthesis.
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 * [http://cdd.alioth.debian.org/science/tasks/typesetting.html Sentinel page]

= Typesetting =

== Editors ==

 * emacs ([http://lists.debian.org/debian-science/2005/08/msg00002.html Andre Lehovich], [http://lists.debian.org/debian-science/2005/08
 * xemacs ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])
 * bluefish ([http://lists.debian.org/debian-science/2005/08/msg00006.html Kenward Vaughan]) /msg00170.html Filippo Rusconi], [http://lists.debian.org/debian-science/2005/08/msg00005.html Enrico Zini])
 * kile ([http://lists.debian.org/debian-science/2005/07/msg00006.html Helen Faulkner], [http://lists.debian.org/debian-science/2005/08/msg00017.html JD Rogers])

== Typesetting tools already packaged in Debian ==

=== TeX/LaTeX ===

 * LaTeX ([http://lists.debian.org/debian-science/2005/07/msg00006.html Helen Faulkner], [http://lists.debian.org/debian-science/2005/08/msg00002.html Andre Lehovich], [http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz], [http://lists.debian.org/debian-science/2005/08/msg00170.html Filippo Rusconi])
 * pdflatex ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])
 * rubber ([http://lists.debian.org/debian-science/2005/08/msg00035.html Gorjanc Gregor], [http://lists.debian.org/debian-science/2005/08/msg00032.html Jukka Suomela])
 * TeX
 * tex4ht
 * texi2dvi ([http://lists.debian.org/debian-science/2005/08/msg00035.html Gorjanc Gregor])
 * texify
 * [http://packages.debian.org/unstable/doc/diploma diploma] Write scientific papers with Debian - Debian GNU/Linux is widely used at universities to do research and to write papers with LaTeX. The package diploma contains examples which illustrate the possible ways to do this effectively with Debian GNU/Linux. Each example consists of a source tree where you can do "make" in the top level directory and then the source code is compiled, the measurement data are processed, and the results are converted into nice figures. Then the text is processed and combined with the figures to a print file.
=== Wysiwyg ===
 * openoffice.org ([http://lists.debian.org/debian-science/2005/07/msg00006.html Helen Faulkner], [http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz], [http://lists.debian.org/debian-science/2005/08/msg00008.html Carlo Segre], [http://lists.debian.org/debian-science/2005/08/msg00006.html Kenward Vaughan], [http://lists.debian.org/debian-science/2005/08/msg00005.html Enrico Zini])
 * scribus ([http://lists.debian.org/debian-science/2005/08/msg00001.html Yaroslav Halchenko])
 *[http://packages.debian.org/unstable/editors/lyx LyX] ([http://www.lyx.org/ upstream]) LyX is an almost WYSIWYG-frontend for LaTeX. It makes the power and typesetting quality of LaTeX available for people who are used to word processors.
=== Viewers ===
 * gv ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])
 * xpdf ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])

=== Useful for slides and posters ===
 * [:DebianScience/ConferenceTools#slides:] Tools for producing slides
 * [:DebianScience/ConferenceTools#posters:] Tools for producing posters

=== Emacs extensions for LaTeX ===
 * [http://packages.debian.org/stable/auctex AUCTeX] ([http://www.gnu.org/software/auctex/ upstream]) Integrated document editing environment for TeX etc.
 One component of AUCTeX that LaTeX users will find attractive is: [http://packages.debian.org/stable/preview-latex-style preview-latex], a combination of folding and in-source previewing that provides true "What You See Is What You Get" experience in your sourcebuffer, while letting you retain full control.
 * [http://packages.debian.org/stable/whizzytex whizzytex] ([http://lists.debian.org/debian-science/2005/08/msg00002.html Andre Lehovich])
 * reftex mode - included with emacs helps with cross references.
 * flyspell mode - on the fly spell checking - included with emacs

 * [ftp://ftp.tex.ac.uk/tex-archive/support/ite/index.html ite] ([http://bugs.debian.org/492651 ITP:#492651]) Position figure labels interactively. [http://sites.google.com/site/ralexowen/debian-packages Preliminary Package]

=== Vector diagrams ===
 * [http://packages.debian.org/unstable/graphics/dia dia] [http://live.gnome.org/Dia upstream] Dia is an editor for diagrams, graphs, charts etc.
 * [http://packages.debian.org/unstable/graphics/xfig xfig] Facility for Interactive Generation of figures under X11
  * [http://packages.debian.org/unstable/graphics/transfig transfig] Utilities for converting XFig figure files
=== Others ===
 * [http://packages.qa.debian.org/s/skribe.html skribe] ''[http://www-sop.inria.fr/mimosa/fp/Skribe/ upstream]'' ([http://lists.debian.org/debian-science/2005/08/msg00171.html Brett Viren])
 * See also [http://www.debian.org/devel/debian-med/doc debian-med/doc]
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 * [http://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=use..typesetting;users=debian-science@lists.debian.org Packages being worked on].

 * epsmerge ([http://lists.debian.org/debian-science/2005/07/msg00007.html Victor Munoz])
 * pyblink (already packaged by [http://lists.debian.org/debian-science/2005/08/msg00001.html Yaroslav Halchenko]): it is for those who have to struggle in OO and write anything which includes bibliographies. pyblink would help you to interact OO with pybliographic and have references done in easier way.
 * Sweave ''[http://www.ci.tuwien.ac.at/~leisch/Sweave/ upstream]'' ([http://lists.debian.org/debian-science/2005/08/msg00035.html Gorjanc Gregor]) very powerful combination of LaTeX and R in one file. This is based on Noweb ideology.
 * yzis ''[http://www.yzis.org/ upstream]'' For vi-like users.

=== Drawing Feynman diagrams ===
 * FeynmanGraph ''[http://www.physics.odu.edu/~musatov/ upstream]''.
 * JaxoDraw ''[http://jaxodraw.sourceforge.net/ upstream]''

= Bibliographies =
=== Managing bibliographies ===
 * [http://packages.debian.org/sid/jabref jabref] JabRef is a GUI to manage BibTeX databases, the standard LaTeX bibliography reference format. JabRef is built to be platform independent (requires Java 1.5). It merges and extends the functionalities of BibKeeper (Morten O. Alver) and JBibtexManager (Nizar Batada).

 *[http://packages.debian.org/unstable/text/bibutils bibutils] ([http://www.scripps.edu/~cdputnam/software/bibutils/ upstream]) Convert between the following bibliographic data formats: BibTeX, COPAC, EndNote refer, EndNote XML, Pubmed XML, ISI web of science, US Library of Congress MODS XML, RIS, and Word 2007 bibliography.
 * [http://packages.debian.org/unstable/kde/kbibtex kbibtex] ([http://www.unix-ag.uni-kl.de/~fischer/kbibtex/ upstream] BibTeX editor for KDE
 * [http://packages.debian.org/unstable/gnome/pybliographer pybliographer] ([http://www.pybliographer.org/ pybliographer] tool for manipulating bibliographic databases
 * [http://packages.debian.org/unstable/gnome/referencer referencer] ([http://icculus.org/referencer/index.html upstream]) Referencer is a GNOME application to organise documents or references, and ultimately generate a BibTeX bibliography file.

== Tools for handling bibliographies that could be considered for inclusion in Debian ==
||[http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=69446 Biomail] ''[http://biomail.sourceforge.net/biomail/ upstream]''||Surveying||GPL|| ||
||[http://refdb.sourceforge.net/ RefDB]||Database||GPL||[http://refdb.sourceforge.net/install.html#debian upstream]||
||[http://www.cs.usyd.edu.au/~tapted/bib2endnote.html bib2endnote]||Converter||GPLv2||depens on Java||
||[http://bioinformatics.org/librarian/ Librarian]||PDF article indexing||GPL||depends on php/mysql/apache||
||[http://gpapers.org/ gPapers]||Bibliography management||GPL||depends on python||
||[http://bibus-biblio.sourceforge.net/wiki/index.php/Main_Page bibus]|| Bibliography management -works with OpenOffice|| ||[http://bibus-biblio.sourceforge.net/wiki/index.php/Installation#Debian unofficial package] ||

Known users from DebianScience listed in parenthesis.



Typesetting tools already packaged in Debian




Useful for slides and posters

Emacs extensions for LaTeX

Vector diagrams


Publishing tools that could be considered for inclusion in Debian

Drawing Feynman diagrams


Managing bibliographies

Tools for handling bibliographies that could be considered for inclusion in Debian





[http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=69446 Biomail] [http://biomail.sourceforge.net/biomail/ upstream]



[http://refdb.sourceforge.net/ RefDB]



[http://refdb.sourceforge.net/install.html#debian upstream]

[http://www.cs.usyd.edu.au/~tapted/bib2endnote.html bib2endnote]



depens on Java

[http://bioinformatics.org/librarian/ Librarian]

PDF article indexing


depends on php/mysql/apache

[http://gpapers.org/ gPapers]

Bibliography management


depends on python

[http://bibus-biblio.sourceforge.net/wiki/index.php/Main_Page bibus]

Bibliography management -works with OpenOffice

[http://bibus-biblio.sourceforge.net/wiki/index.php/Installation#Debian unofficial package]