Task |
Name |
Licence |
Packaging |
|
Importance |
|
Primer design |
GPL |
depends on ?BioPerl and ncbi-blast |
|
free |
||
In Silico PCR |
LGPL |
part of the exonerate package |
|
free |
||
Primer design and in silico PCR |
no licence |
Depends on bioperl, blast2, primer3 (to be patched) |
|
sounds powerful... and power-hungry |
||
Primer Design across exon-intron junctions, uses Primer3 and BLAT |
ExonPrimer |
no licence |
Webpage Javascript |
|
Free |
|
Oligo Properties Calculator for ?TaqMan and SYBR Green oligos |
[javascript:void(0);/*1232001073765*/ Beacon Designer (Free Edition)] |
no licence |
Webpage Javascript |
|
Free |
|
Primer design |
not found |
|
|
|
||
Oligonucleotide analysis |
free distribution for education and non-commercial |
javascript web page |
|
available on the web anyway |
||
Oligonucleotide analysis |
GPL |
java |
|
free |
||
Synthethic gene design |
none? |
perl CGI |
|
|
||
Analysis of bisulphite PCR results |
disallowed |
|
no packaging |
|||
Normalisation of qPCR |
Not found |
R script |
|
|
||
|
|
|
|
|
|
|
RNA secondary structure visualization |
jViz.Rna |
GPL (to clarify) |
java |
|
seems useful |
|
Molecular structure visualisation |
?QuteMol |
free |
|
not important |
||
Epitope mapping |
not found |
looks easy |
|
|
||
Task |
Name |
Licence |
Packaging |
|
Importance |
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