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= Debian Med Blend meeting in Lübeck = | = Debian Med Blend meeting in Lübeck = |
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It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits. | It seems somewhat amazing, but most of the [[DebianMed|Debian Med]] contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits. |
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== Tops == * improving our interaction with BioLinux@Oxford - Tim already agreed to come |
== Location, Date == * when: January 28-31, 2011 * where: [[http://www.travemuende.de/tourismus/geschichte/stadtportrait/en/index.html|Travemünde]], Germany ([[http://www.openstreetmap.org/?lat=53.96838&lon=10.88009&zoom=14|OSM]]) at [[http://www.deutscher-kaiser-travemuende.de/|Hotel Deutscher Kaiser]]. == Participants == ||No|| Name || Email || Organisation || Living in || Arrival at || Departure at || || 1|| Steffen Möller || <moeller> || U Lübeck (Debian) || Lübeck (D) || 28.01.2011 || 31.01.2011 || || 2|| Andreas Tille || <tille> || Debian || Wernigerode (D) || 28.01.2011 || 31.01.2011 || || 3|| Tim Booth || tbooth_ceh.ac.uk || [[http://nebc.nerc.ac.uk/tools/bio-linux|NERC]] (Bio-Linux) || Oxford (UK) || 28.01.2011 || 30.01.2011 || || 4|| Pjotr Prins || || U Wageningen (Debian) || Wageningen (NL)|| || || || 5|| Alan Williams || || U Manchester (Taverna) || Manchester (UK) || || || || 6|| Hajo Krabbenhöft || || U Lübeck (M.sc. student) || Lübeck (D) || 28.01.2011 || 31.01.2011 || || 7|| Yask Gupta || || U Lübeck (Ph.D. student) || Lübeck (D) || 28.01.2011 || 31.01.2011 || || 8|| Kushal Sejwal || || U Lübeck (Ph.D. student) || Würzburg (D) || 28.01.2011 || 31.01.2011 || || 9|| Richard Holland || || Eaglegenomics (Debian) || Southampton (UK)|| 28.01.2011 || 31.01.2001 || ||10|| Will Spooner || || Eaglegenomics || Babraham (UK) || 29.01.2001 || 31.01.2001 || ||11|| Peter Rice || || EBI (EMBOSS) || Hinxton (UK) || || || ||12|| Jim Procter || || U Glasgow (Jalview) || Glasgow (UK) || || || ||13|| Michael Banck || <banck> || Debian || Munich (D) || 28.01.2011 || 31.01.2011 || ||14|| Andreas Hildebrandt || || U Saarbrücken (BALLview) || Saarbrücken (D) || 28.01.2011 || 31.01.2011 || ||15|| Sri Girish Srinivasa Murthy || || MPI Evol. Biol. || Plön (D) || 28.01.2011 || 31.01.2011 || ||16|| Jürgen Doenitz || || U Göttingen (Göbix) || Göttingen (D) || 28.01.2011 || 31.01.2011 || ||17|| Tony Travis || || U Aberdeen || Aberdeen (UK) || 28.01.2011 || 31.01.2011 || ||18|| Christian Steigies || <cts> || U Kiel (Debian) || Kiel (D) || 28.01.2011 || 30.01.2011 || ||19|| || || || || || || ||20|| || || || || || || == Agenda == * improving our interaction with [[http://nebc.nerc.ac.uk/tools/bio-linux|BioLinux]] * Finding ways to make better use of [[DebianMed|Debian Med]] in [[http://nebc.nerc.ac.uk/tools/bio-linux|BioLinux]] to save man power * Integrating bits into [[DebianMed|Debian Med]] which are not yet available |
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* Bio* roundup | |
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* Immunoinformatics * Cloud computing |
|
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* BioLib * Taverna |
* [[http://www.biolib.cz/en/main/|BioLib]] * strategies for packaging with minimal redundancy across packages * first upload to experimental * [[http://www.taverna.org.uk/introduction/taverna-in-use/biology/|Taverna]] * formulating joint workflows * identify missing packagings * plan for packaging Taverna itself * organisational issues * ties to [[https://alioth.debian.org/projects/pkg-java/|pkg-java]] * relation to other [[DebianPureBlends|Blends]] * identify missing packages and setting priorities |
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* thinning the line between Debian and educators | |
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* first joint paper recently accepted in BMC Bioinformatics | * [[http://www.biomedcentral.com/1471-2105/11/S12/S5|first joint paper]] recently accepted in BMC Bioinformatics * discuss paper on [[getData]] |
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== Participants == | == Program == |
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* Confirmed: Andreas <tille>, Steffen <moeller>, Tim@Oxford * Pending: Groningen, Cambridge, Manchester, Glasgow |
We should have Saturday (29th) and Sunday (30th) to truly concentrate on our work. Participants should (and most do) arrive on Friday (28th) and leave on Monday (31th). Teams will split and summarise at coffee breaks on their respective status/issues. |
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== Venue == | Friday is the day for setups, individual training and learning about the novel developments and on-hand insights into problems at another site, allowing for the teams' detailed scheduling for Saturday and Sunday. Monday will be used to wrap up, literally and in writing. |
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A hotel in Travemünde. | == Teams / subgroups == |
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== Sponsors == | TBA |
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None, yet. | == Acknowledgements == the [[Sprints|sprint]] has been possible thanks to: * travel support by U Manchester, NERC, U Glasgow, Eaglegenomics, European Bioinformatics Institute * Debian Society ---- CategorySprint |
Debian Med Blend meeting in Lübeck
It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.
Location, Date
- when: January 28-31, 2011
where: Travemünde, Germany (OSM) at Hotel Deutscher Kaiser.
Participants
No |
Name |
Organisation |
Living in |
Arrival at |
Departure at |
|
1 |
Steffen Möller |
<moeller> |
U Lübeck (Debian) |
Lübeck (D) |
28.01.2011 |
31.01.2011 |
2 |
Andreas Tille |
<tille> |
Debian |
Wernigerode (D) |
28.01.2011 |
31.01.2011 |
3 |
Tim Booth |
tbooth_ceh.ac.uk |
NERC (Bio-Linux) |
Oxford (UK) |
28.01.2011 |
30.01.2011 |
4 |
Pjotr Prins |
|
U Wageningen (Debian) |
Wageningen (NL) |
|
|
5 |
Alan Williams |
|
U Manchester (Taverna) |
Manchester (UK) |
|
|
6 |
Hajo Krabbenhöft |
|
U Lübeck (M.sc. student) |
Lübeck (D) |
28.01.2011 |
31.01.2011 |
7 |
Yask Gupta |
|
U Lübeck (Ph.D. student) |
Lübeck (D) |
28.01.2011 |
31.01.2011 |
8 |
Kushal Sejwal |
|
U Lübeck (Ph.D. student) |
Würzburg (D) |
28.01.2011 |
31.01.2011 |
9 |
Richard Holland |
|
Eaglegenomics (Debian) |
Southampton (UK) |
28.01.2011 |
31.01.2001 |
10 |
Will Spooner |
|
Eaglegenomics |
Babraham (UK) |
29.01.2001 |
31.01.2001 |
11 |
Peter Rice |
|
EBI (EMBOSS) |
Hinxton (UK) |
|
|
12 |
Jim Procter |
|
U Glasgow (Jalview) |
Glasgow (UK) |
|
|
13 |
Michael Banck |
<banck> |
Debian |
Munich (D) |
28.01.2011 |
31.01.2011 |
14 |
Andreas Hildebrandt |
|
U Saarbrücken (BALLview) |
Saarbrücken (D) |
28.01.2011 |
31.01.2011 |
15 |
Sri Girish Srinivasa Murthy |
|
MPI Evol. Biol. |
Plön (D) |
28.01.2011 |
31.01.2011 |
16 |
Jürgen Doenitz |
|
U Göttingen (Göbix) |
Göttingen (D) |
28.01.2011 |
31.01.2011 |
17 |
Tony Travis |
|
U Aberdeen |
Aberdeen (UK) |
28.01.2011 |
31.01.2011 |
18 |
Christian Steigies |
<cts> |
U Kiel (Debian) |
Kiel (D) |
28.01.2011 |
30.01.2011 |
19 |
|
|
|
|
|
|
20 |
|
|
|
|
|
|
Agenda
improving our interaction with BioLinux
Finding ways to make better use of Debian Med in BioLinux to save man power
Integrating bits into Debian Med which are not yet available
- integration of public resources
- brainstorm about how data.debian.org could help
review getData and link it with several packages
- review of latest developments
- organisational issues
- strategies for further development
- thinning the line between Debian and upstream
- thinning the line between Debian and educators
- outreach
first joint paper recently accepted in BMC Bioinformatics
discuss paper on getData
- papers citing or mentioning us
- books and book chapters
Program
We should have Saturday (29th) and Sunday (30th) to truly concentrate on our work. Participants should (and most do) arrive on Friday (28th) and leave on Monday (31th). Teams will split and summarise at coffee breaks on their respective status/issues.
Friday is the day for setups, individual training and learning about the novel developments and on-hand insights into problems at another site, allowing for the teams' detailed scheduling for Saturday and Sunday. Monday will be used to wrap up, literally and in writing.
Teams / subgroups
TBA
Acknowledgements
the sprint has been possible thanks to:
- travel support by U Manchester, NERC, U Glasgow, Eaglegenomics, European Bioinformatics Institute
- Debian Society