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= Debian Med Blend meeting in Lübeck = | = Debian Med Blend meeting in Lübeck = |
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It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits. | It seems somewhat amazing, but most of the [[DebianMed|Debian Med]] contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits. |
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== Tops == * improving our interaction with BioLinux@Oxford - Tim already agreed to come |
== Location, Date == * when: January 28-31, 2011 * where: [[http://www.travemuende.de/tourismus/geschichte/stadtportrait/en/index.html|Travemünde]], Germany ([[http://www.openstreetmap.org/?lat=53.96838&lon=10.88009&zoom=14|OSM]]) at the [[http://www.strandperle-travemuende.com?lang=en|Hotel Strandperle]]. == Participants == ||No|| Name || Email || Organisation || Living in || Arrival at || Departure at || || 1|| Steffen Möller || <moeller> || U Lübeck (Debian) || Lübeck (D) || 28.01.2011 || 31.01.2010 || || 2|| Andreas Tille || <tille> || Debian || Wernigerode (D) || 28.01.2011 || 31.01.2010 || || 3|| Tim Booth || tbooth_ceh.ac.uk || [[http://nebc.nerc.ac.uk/tools/bio-linux|NERC]] (BioLinux) || Oxford (UK) || 28.01.2011 || 31.01.2010 || || 4|| Pjotr Prins || || U Wageningen (Debian) || Wageningen (NL)|| || || || 5|| Alan Williams || || U Manchester (Taverna) || Manchester (UK) || || || || 6|| Hajo Krabbenhöft || || U Lübeck (M.sc. student) || Lübeck (D) || 28.01.2011 || 31.01.2010 || || 7|| Yask Gupta || || U Lübeck (Ph.D. student) || Lübeck (D) || 28.01.2011 || 31.01.2010 || || 8|| Kushal Sejwal || || U Lübeck (Ph.D. student) || Würzburg (D) || 28.01.2011 || 31.01.2010 || || 9|| Richard Holland || || Eaglegenomics (Debian) || Southampton (UK)|| || || ||10|| Will Spooner || || Eaglegenomics || Babraham (UK) || || || ||11|| Peter Rice || || EBI (EMBOSS) || Hinxton (UK) || || || ||12|| Jim Procter || || U Glasgow (Jalview) || Glasgow (UK) || || || ||13|| Michael Banck || <banck> || Debian || ? (D?) || 28.01.2011 || 31.01.2010 || ||14|| Andreas Hildebrandt || || U Saarbrücken (BALLview) || Saarbrücken (D) || 28.01.2011 || 31.01.2010 || ||15|| Sri Girish Srinivasa Murthy || || MPI Evol. Biol.|| Plön (D) || 28.01.2011 || 31.01.2011 || ||16|| || || || || || || ||17|| || || || || || || ||18|| || || || || || || ||19|| || || || || || || ||20|| || || || || || || * Pending: Goettingen, Lübeck, Copenhagen, Darmstadt == Agenda == * improving our interaction with [[http://nebc.nerc.ac.uk/tools/bio-linux|BioLinux]] * Finding ways to make better use of [[DebianMed|Debian Med]] in [[http://nebc.nerc.ac.uk/tools/bio-linux|BioLinux]] to save man power * Integrating bits into [[DebianMed|Debian Med]] which are not yet available |
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* Bio* roundup | |
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* Immunoinformatics * Cloud computing |
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* BioLib * Taverna |
* [[http://www.biolib.cz/en/main/|BioLib]] * strategies for packaging with minimal redundancy across packages * first upload to experimental * [[http://www.taverna.org.uk/introduction/taverna-in-use/biology/|Taverna]] * formulating joint workflows * identify missing packagings * plan for packaging Taverna itself * organisational issues * ties to [[https://alioth.debian.org/projects/pkg-java/|pkg-java]] * relation to other [[DebianPureBlends|Blends]] * identify missing packages and setting priorities |
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* thinning the line between Debian and educators | |
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* discuss paper on getData | |
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== Participants == | == Teams / subgroups == |
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* Confirmed: Andreas <tille>, Steffen <moeller>, Tim@Oxford * Pending: Groningen, Cambridge, Manchester, Glasgow |
TBA |
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== Venue == | == Acknowledgements == |
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A hotel in Travemünde. | the sprint has been possible thanks to: |
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== Sponsors == | * travel support by U Manchester, NERC, U Glasgow, Eaglegenomics, European Bioinformatics Institute * we still hope for some external contributions |
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None, yet. | ---- CategorySprint |
Debian Med Blend meeting in Lübeck
It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.
Location, Date
- when: January 28-31, 2011
where: Travemünde, Germany (OSM) at the Hotel Strandperle.
Participants
No |
Name |
Organisation |
Living in |
Arrival at |
Departure at |
|
1 |
Steffen Möller |
<moeller> |
U Lübeck (Debian) |
Lübeck (D) |
28.01.2011 |
31.01.2010 |
2 |
Andreas Tille |
<tille> |
Debian |
Wernigerode (D) |
28.01.2011 |
31.01.2010 |
3 |
Tim Booth |
tbooth_ceh.ac.uk |
Oxford (UK) |
28.01.2011 |
31.01.2010 |
|
4 |
Pjotr Prins |
|
U Wageningen (Debian) |
Wageningen (NL) |
|
|
5 |
Alan Williams |
|
U Manchester (Taverna) |
Manchester (UK) |
|
|
6 |
Hajo Krabbenhöft |
|
U Lübeck (M.sc. student) |
Lübeck (D) |
28.01.2011 |
31.01.2010 |
7 |
Yask Gupta |
|
U Lübeck (Ph.D. student) |
Lübeck (D) |
28.01.2011 |
31.01.2010 |
8 |
Kushal Sejwal |
|
U Lübeck (Ph.D. student) |
Würzburg (D) |
28.01.2011 |
31.01.2010 |
9 |
Richard Holland |
|
Eaglegenomics (Debian) |
Southampton (UK) |
|
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10 |
Will Spooner |
|
Eaglegenomics |
Babraham (UK) |
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11 |
Peter Rice |
|
EBI (EMBOSS) |
Hinxton (UK) |
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12 |
Jim Procter |
|
U Glasgow (Jalview) |
Glasgow (UK) |
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13 |
Michael Banck |
<banck> |
Debian |
? (D?) |
28.01.2011 |
31.01.2010 |
14 |
Andreas Hildebrandt |
|
U Saarbrücken (BALLview) |
Saarbrücken (D) |
28.01.2011 |
31.01.2010 |
15 |
Sri Girish Srinivasa Murthy |
|
MPI Evol. Biol. |
Plön (D) |
28.01.2011 |
31.01.2011 |
16 |
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17 |
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18 |
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19 |
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20 |
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- Pending: Goettingen, Lübeck, Copenhagen, Darmstadt
Agenda
improving our interaction with BioLinux
Finding ways to make better use of Debian Med in BioLinux to save man power
Integrating bits into Debian Med which are not yet available
- integration of public resources
- brainstorm about how data.debian.org could help
review getData and link it with several packages
- review of latest developments
- organisational issues
- strategies for further development
- thinning the line between Debian and upstream
- thinning the line between Debian and educators
- outreach
- first joint paper recently accepted in BMC Bioinformatics
- discuss paper on getData
- papers citing or mentioning us
- books and book chapters
Teams / subgroups
TBA
Acknowledgements
the sprint has been possible thanks to:
- travel support by U Manchester, NERC, U Glasgow, Eaglegenomics, European Bioinformatics Institute
- we still hope for some external contributions