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= Debian Med Blend meeting in Lübeck = = Debian Med Blend meeting in Lübeck =
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It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-low-hanging fruits. It seems somewhat amazing, but most of the [[DebianMed|Debian Med]] contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.
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== Tops ==
 * improving our interaction with BioLinux@Oxford - Tim already agreed to come
== Location, Date ==

 * when: January 28-31, 2011
 * where: [[http://www.travemuende.de/tourismus/geschichte/stadtportrait/en/index.html|Travemünde]], Germany ([[http://www.openstreetmap.org/?lat=53.96838&lon=10.88009&zoom=14|OSM]]) at [[http://www.deutscher-kaiser-travemuende.de/|Hotel Deutscher Kaiser]].

== Participants ==

||No|| Name || Email || Organisation || Living in || Arrival at || Departure at ||
|| 1|| Steffen Möller || <moeller> || U Lübeck (Debian) || Lübeck (D) || 28.01.2011 || 31.01.2011 ||
|| 2|| Andreas Tille || <tille> || Debian || Wernigerode (D) || 28.01.2011 || 31.01.2011 ||
|| 3|| Tim Booth || tbooth_ceh.ac.uk || [[http://nebc.nerc.ac.uk/tools/bio-linux|NERC]] (Bio-Linux) || Oxford (UK) || 28.01.2011 || 30.01.2011 ||
|| 4|| Pjotr Prins || || U Wageningen (Debian) || Wageningen (NL)|| || ||
|| 5|| Alan Williams || || U Manchester (Taverna) || Manchester (UK) || || ||
|| 6|| Hajo Krabbenhöft || || U Lübeck (M.sc. student) || Lübeck (D) || 28.01.2011 || 31.01.2011 ||
|| 7|| Yask Gupta || || U Lübeck (Ph.D. student) || Lübeck (D) || 28.01.2011 || 31.01.2011 ||
|| 8|| Kushal Sejwal || || U Lübeck (Ph.D. student) || Würzburg (D) || 28.01.2011 || 31.01.2011 ||
|| 9|| Richard Holland || || Eaglegenomics (Debian) || Southampton (UK)|| 28.01.2011 || 31.01.2001 ||
||10|| Will Spooner || || Eaglegenomics || Babraham (UK) || 29.01.2001 || 31.01.2001 ||
||11|| Peter Rice || || EBI (EMBOSS) || Hinxton (UK) || || ||
||12|| Jim Procter || || U Glasgow (Jalview) || Glasgow (UK) || || ||
||13|| Michael Banck || <banck> || Debian || Munich (D) || 28.01.2011 || 31.01.2011 ||
||14|| Andreas Hildebrandt || || U Saarbrücken (BALLview) || Saarbrücken (D) || 28.01.2011 || 31.01.2011 ||
||15|| Sri Girish Srinivasa Murthy || || MPI Evol. Biol. || Plön (D) || 28.01.2011 || 31.01.2011 ||
||16|| Jürgen Doenitz || || U Göttingen (Göbix) || Göttingen (D) || 28.01.2011 || 31.01.2011 ||
||17|| Tony Travis || || U Aberdeen || Aberdeen (UK) || 28.01.2011 || 31.01.2011 ||
||18|| Christian Steigies || <cts> || U Kiel (Debian) || Kiel (D) || 28.01.2011 || 30.01.2011 ||
||19|| Antje Krause || || FH Bingen || Bingen (D) || || ||
||20|| Olivier Sallou || || IRISA (symbiose) || Rennes (F) || || ||


== Agenda ==
 * improving our interaction with [[http://nebc.nerc.ac.uk/tools/bio-linux|BioLinux]]
  * Finding ways to make better use of [[DebianMed|Debian Med]] in [[http://nebc.nerc.ac.uk/tools/bio-linux|BioLinux]] to save man power
  * Integrating bits into [[DebianMed|Debian Med]] which are not yet available
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  * Bio* roundup
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  * Immunoinformatics
  * Cloud computing
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  * BioLib
  * Taverna
  * [[http://www.biolib.cz/en/main/|BioLib]]
   * strategies for packaging with minimal redundancy across packages
   * first upload to experimental
  * [[http://www.taverna.org.uk/introduction/taverna-in-use/biology/|Taverna]]
   * formulating joint workflows
   * identify missing packagings
   * plan for packaging Taverna itself
 * organisational issues
  * ties to [[https://alioth.debian.org/projects/pkg-java/|pkg-java]]
  * relation to other [[DebianPureBlends|Blends]]
  * identify missing packages and setting priorities
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  * thinning the line between Debian and educators
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   * first joint paper recently accepted in BMC Bioinformatics    * [[http://www.biomedcentral.com/1471-2105/11/S12/S5|first joint paper]] recently accepted in BMC Bioinformatics
   * discuss paper on [[getData]]
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== Participants == == Program ==
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* Confirmed: Andreas <tille>, Steffen <moeller>, Tim@Oxford
* Pending: Groningen, Cambridge, Manchester, Glasgow
We should have Saturday (29th) and Sunday (30th) to truly concentrate on our work. Participants should (and most do) arrive on Friday (28th) and leave on Monday (31th). Teams will split and summarise at coffee breaks on their respective status/issues.
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== Venue == Friday is the day for setups, individual training and learning about the novel developments and on-hand insights into problems at another site, allowing for the teams' detailed scheduling for Saturday and Sunday. Monday will be used to wrap up, literally and in writing.
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A hotel in Travem&uuml;nde. == Teams / subgroups ==
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== Sponsors == TBA
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None, yet. == Acknowledgements ==

the [[Sprints|sprint]] has been possible thanks to:

 * travel support by U Manchester, NERC, U Glasgow, Eaglegenomics, European Bioinformatics Institute
 * Debian Society



----
CategorySprint

Debian Med Blend meeting in Lübeck

It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.

Location, Date

Participants

No

Name

Email

Organisation

Living in

Arrival at

Departure at

1

Steffen Möller

<moeller>

U Lübeck (Debian)

Lübeck (D)

28.01.2011

31.01.2011

2

Andreas Tille

<tille>

Debian

Wernigerode (D)

28.01.2011

31.01.2011

3

Tim Booth

tbooth_ceh.ac.uk

NERC (Bio-Linux)

Oxford (UK)

28.01.2011

30.01.2011

4

Pjotr Prins

U Wageningen (Debian)

Wageningen (NL)

5

Alan Williams

U Manchester (Taverna)

Manchester (UK)

6

Hajo Krabbenhöft

U Lübeck (M.sc. student)

Lübeck (D)

28.01.2011

31.01.2011

7

Yask Gupta

U Lübeck (Ph.D. student)

Lübeck (D)

28.01.2011

31.01.2011

8

Kushal Sejwal

U Lübeck (Ph.D. student)

Würzburg (D)

28.01.2011

31.01.2011

9

Richard Holland

Eaglegenomics (Debian)

Southampton (UK)

28.01.2011

31.01.2001

10

Will Spooner

Eaglegenomics

Babraham (UK)

29.01.2001

31.01.2001

11

Peter Rice

EBI (EMBOSS)

Hinxton (UK)

12

Jim Procter

U Glasgow (Jalview)

Glasgow (UK)

13

Michael Banck

<banck>

Debian

Munich (D)

28.01.2011

31.01.2011

14

Andreas Hildebrandt

U Saarbrücken (BALLview)

Saarbrücken (D)

28.01.2011

31.01.2011

15

Sri Girish Srinivasa Murthy

MPI Evol. Biol.

Plön (D)

28.01.2011

31.01.2011

16

Jürgen Doenitz

U Göttingen (Göbix)

Göttingen (D)

28.01.2011

31.01.2011

17

Tony Travis

U Aberdeen

Aberdeen (UK)

28.01.2011

31.01.2011

18

Christian Steigies

<cts>

U Kiel (Debian)

Kiel (D)

28.01.2011

30.01.2011

19

Antje Krause

FH Bingen

Bingen (D)

20

Olivier Sallou

IRISA (symbiose)

Rennes (F)

Agenda

  • improving our interaction with BioLinux

  • integration of public resources
    • brainstorm about how data.debian.org could help
    • review getData and link it with several packages

  • review of latest developments
    • Bio* roundup
    • Ensembl
    • Immunoinformatics
    • Cloud computing
    • Next generation sequencing
    • BioLib

      • strategies for packaging with minimal redundancy across packages
      • first upload to experimental
    • Taverna

      • formulating joint workflows
      • identify missing packagings
      • plan for packaging Taverna itself
  • organisational issues
    • ties to pkg-java

    • relation to other Blends

    • identify missing packages and setting priorities
  • strategies for further development
    • thinning the line between Debian and upstream
    • thinning the line between Debian and educators
    • outreach
      • first joint paper recently accepted in BMC Bioinformatics

      • discuss paper on getData

      • papers citing or mentioning us
      • books and book chapters

Program

We should have Saturday (29th) and Sunday (30th) to truly concentrate on our work. Participants should (and most do) arrive on Friday (28th) and leave on Monday (31th). Teams will split and summarise at coffee breaks on their respective status/issues.

Friday is the day for setups, individual training and learning about the novel developments and on-hand insights into problems at another site, allowing for the teams' detailed scheduling for Saturday and Sunday. Monday will be used to wrap up, literally and in writing.

Teams / subgroups

TBA

Acknowledgements

the sprint has been possible thanks to:

  • travel support by U Manchester, NERC, U Glasgow, Eaglegenomics, European Bioinformatics Institute
  • Debian Society


CategorySprint