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= Debian Med Blend meeting in Lübeck = = Debian Med Blend meeting in Lübeck =
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It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-low-hanging fruits. It seems somewhat amazing, but most of the [[DebianMed|Debian Med]] contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.
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== Tops ==
 * improving our interaction with BioLinux@Oxford - Tim already agreed to come
== Location, Date ==

 * when: January 28-31, 2011
 * where: [[http://www.travemuende.de/tourismus/geschichte/stadtportrait/en/index.html|Travemünde]] ([[http://www.openstreetmap.org/?lat=53.96838&lon=10.88009&zoom=14|OSM]]) (close to Lübeck) at the [[http://www.strandperle-travemuende.com/flash/?lang=en|Hotel Strandperle]].

== Participants ==

||No|| Name || Email || Organisation || Living in || Arrival at || Departure at ||
|| 1|| Steffen Möller || moeller_debian.org || U Lübeck (Debian) || Lübeck (D) || 28.01.2011 || 31.01.2010 ||
|| 2|| Andreas Tille || tille_debian.org || Debian || Wernigerode (D) || 28.01.2011 || 31.01.2010 ||
|| 3|| Tim Booth || tbooth_ceh.ac.uk || [[http://nebc.nerc.ac.uk/tools/bio-linux|NERC]] (BioLinux) || Oxford (UK) || 28.01.2011 || 31.01.2010 ||
|| 4|| Pjotr Prins || || U Wageningen (Debian) || Wageningen (NL)|| || ||
|| 5|| Alan Williams || || U Manchester (Taverna) || Manchester (UK) || || ||
|| 6|| Hajo Krabbenhöft || || M.sc. student || Lübeck (D) || 28.01.2011 || 31.01.2010 ||
|| 7|| Yask Gupta || || Ph.D. student || Lübeck (D) || 28.01.2011 || 31.01.2010 ||
|| 8|| Kushal Sejwal || || Ph.D. student || Würzburg (D) || 28.01.2011 || 31.01.2010 ||
|| 9|| Richard Holland || || Eaglegenomics (Debian) || Southampton (UK)|| || ||
||10|| Will Spooner || || Eaglegenomics || Babraham (UK) || || ||
||11|| Peter Rice || || EBI (EMBOSS) || Hinxton (UK) || || ||
||12|| Jim Procter || || U Glasgow (Jalview) || Glasgow (UK) || || ||
||13|| Andreas Hildebrandt || || U Saarbrücken (BALLview) || Saarbrücken (D) || 28.01.2011 || 31.01.2010 ||

 * Pending: Goettingen, Stockholm, Helsinki, Kiel, 2nd person from Manchester

== Agenda ==
 * improving our interaction with [[http://nebc.nerc.ac.uk/tools/bio-linux|BioLinux]]
  * Finding ways to make better use of [[DebianMed|Debian Med]] in [[http://nebc.nerc.ac.uk/tools/bio-linux|BioLinux]] to save man power
  * Integrating bits into [[DebianMed|Debian Med]] which are not yet available
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  * Bio* roundup
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  * Cloud computing
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  * BioLib
  * Taverna
  * [[http://www.biolib.cz/en/main/|BioLib]]
   * strategies for packaging with minimal redundancy across packages
   * first upload to experimental
  * [[http://www.taverna.org.uk/introduction/taverna-in-use/biology/|Taverna]]
   * formulating joint workflows
   * identify missing packagings
   * plan for packaging Taverna itself
 * organisational issues
  * ties to [[https://alioth.debian.org/projects/pkg-java/|pkg-java]]
  * relation to other [[DebianPureBlends|Blends]]
  * identify missing packages and setting priorities
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  * thinning the line between Debian and educators
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== Participants ==
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* Confirmed: Andreas <tille>, Steffen <moeller>, Tim@Oxford
* Pending: Groningen, Cambridge, Manchester, Glasgow
== Acknowledgements ==
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== Venue == the sprint has been possible thanks to:
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A hotel in Travem&uuml;nde.  * travel support by U Manchester, NERC, U Glasgow, Eaglegenomics, European Bioinformatics Institute
 * we still hope for some external contributions
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== Sponsors ==
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None, yet.
----
CategorySprint

Debian Med Blend meeting in Lübeck

It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.

Location, Date

Participants

No

Name

Email

Organisation

Living in

Arrival at

Departure at

1

Steffen Möller

moeller_debian.org

U Lübeck (Debian)

Lübeck (D)

28.01.2011

31.01.2010

2

Andreas Tille

tille_debian.org

Debian

Wernigerode (D)

28.01.2011

31.01.2010

3

Tim Booth

tbooth_ceh.ac.uk

NERC (?BioLinux)

Oxford (UK)

28.01.2011

31.01.2010

4

Pjotr Prins

U Wageningen (Debian)

Wageningen (NL)

5

Alan Williams

U Manchester (Taverna)

Manchester (UK)

6

Hajo Krabbenhöft

M.sc. student

Lübeck (D)

28.01.2011

31.01.2010

7

Yask Gupta

Ph.D. student

Lübeck (D)

28.01.2011

31.01.2010

8

Kushal Sejwal

Ph.D. student

Würzburg (D)

28.01.2011

31.01.2010

9

Richard Holland

Eaglegenomics (Debian)

Southampton (UK)

10

Will Spooner

Eaglegenomics

Babraham (UK)

11

Peter Rice

EBI (EMBOSS)

Hinxton (UK)

12

Jim Procter

U Glasgow (Jalview)

Glasgow (UK)

13

Andreas Hildebrandt

U Saarbrücken (BALLview)

Saarbrücken (D)

28.01.2011

31.01.2010

  • Pending: Goettingen, Stockholm, Helsinki, Kiel, 2nd person from Manchester

Agenda

  • improving our interaction with BioLinux

  • integration of public resources
    • brainstorm about how data.debian.org could help
    • review getData and link it with several packages

  • review of latest developments
    • Bio* roundup
    • Ensembl
    • Cloud computing
    • Next generation sequencing
    • BioLib

      • strategies for packaging with minimal redundancy across packages
      • first upload to experimental
    • Taverna

      • formulating joint workflows
      • identify missing packagings
      • plan for packaging Taverna itself
  • organisational issues
    • ties to pkg-java

    • relation to other Blends

    • identify missing packages and setting priorities
  • strategies for further development
    • thinning the line between Debian and upstream
    • thinning the line between Debian and educators
    • outreach
      • first joint paper recently accepted in BMC Bioinformatics
      • papers citing or mentioning us
      • books and book chapters

Acknowledgements

the sprint has been possible thanks to:

  • travel support by U Manchester, NERC, U Glasgow, Eaglegenomics, European Bioinformatics Institute
  • we still hope for some external contributions


CategorySprint