Differences between revisions 1 and 28 (spanning 27 versions)
Revision 1 as of 2010-10-31 19:43:25
Size: 1118
Comment:
Revision 28 as of 2010-11-15 00:51:02
Size: 3519
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
= Debian Med Blend meeting in Lübeck = = Debian Med Blend meeting in Lübeck =
Line 3: Line 3:
It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-low-hanging fruits. It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.
Line 5: Line 5:
== Tops ==
 * improving our interaction with BioLinux@Oxford - Tim already agreed to come
== Location, Date ==

 * when: January 28-31, 2011
 * where: [[http://www.travemuende.de/tourismus/geschichte/stadtportrait/en/index.html|Travemünde]] ([[http://www.openstreetmap.org/?lat=53.96838&lon=10.88009&zoom=14|OSM]]) (close to Lübeck) at the [[http://www.strandperle-travemuende.com/flash/?lang=en|Hotel Strandperle]].

== Participants ==

||No|| Name || Email || Organisation || Living in || Arrival at || Departure at ||
||1|| Steffen Möller || moeller_debian.org || U Lübeck (Debian) || Lübeck (D) || 28.01.2011 || 31.01.2010 ||
||2|| Andreas Tille || tille_debian.org || Debian || Wernigerode (D) || 28.01.2011 || 31.01.2010 ||
||3|| Tim Booth || tbooth_ceh.ac.uk || [[http://nebc.nerc.ac.uk/tools/bio-linux-5/bio-linux-5.0|NERC]] (BioLinux) || Oxford (UK) || 28.01.2011 || 31.01.2010 ||
||4|| Pjotr Prins || || U Wageningen (Debian) || Wageningen/Groningen (NL)|| || ||
||5|| Alan Williams || || U Manchester (Taverna)|| Manchester (UK) || || ||
||6|| Hajo Krabbenhöft || || M.sc. student || Lübeck (D) || 28.01.2011 || 31.01.2010 ||
||7|| Yask Gupta || || Ph.D. student || Lübeck (D) || 28.01.2011 || 31.01.2010 ||
||8|| Kushal Sejwal || || Ph.D. student || Würzburg (D) || 28.01.2011 || 31.01.2010 ||

 * Pending: Goettingen, Cambridge, Glasgow, Stockholm, Helsinki, Hamburg


== Agenda ==
 * improving our interaction with [[http://nebc.nerc.ac.uk/tools/bio-linux-5/bio-linux-5.0|BioLinux]]
  * Finding ways to make better use of [[DebianMed|Debian Med]] in [[http://nebc.nerc.ac.uk/tools/bio-linux-5/bio-linux-5.0|BioLinux]] to save man power
  * Integrating bits into [[DebianMed|Debian Med]] which are not yet available
Line 11: Line 33:
  * Bio* roundup
Line 12: Line 35:
  * Cloud computing
Line 13: Line 37:
  * BioLib
  * Taverna
  * [[http://www.biolib.cz/en/main/|BioLib]]
   * strategies for packaging with minimal redundancy across packages
   * first upload to experimental
  * [[http://www.taverna.org.uk/introduction/taverna-in-use/biology/|Taverna]]
   * formulating joint workflows
   * identify missing packagings
   * plan for packaging Taverna itself
 * organisational issues
  * ties to [[https://alioth.debian.org/projects/pkg-java/|pkg-java]]
  * relation to other [[DebianPureBlends|Blends]]
  * identify missing packages and setting priorities
Line 17: Line 50:
  * thinning the line between Debian and educators
Line 22: Line 56:
== Participants ==
Line 24: Line 57:
* Confirmed: Andreas <tille>, Steffen <moeller>, Tim@Oxford
* Pending: Groningen, Cambridge, Manchester, Glasgow
== Acknowledgements ==
Line 27: Line 59:
== Venue == the sprint has been possible thanks to:
Line 29: Line 61:
A hotel in Travem&uuml;nde.  * travel support by U Manchester, NERC
 * we still hope for some external contributions
Line 31: Line 64:
== Sponsors ==
Line 33: Line 65:
None, yet.
----
CategorySprint

Debian Med Blend meeting in Lübeck

It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.

Location, Date

Participants

No

Name

Email

Organisation

Living in

Arrival at

Departure at

1

Steffen Möller

moeller_debian.org

U Lübeck (Debian)

Lübeck (D)

28.01.2011

31.01.2010

2

Andreas Tille

tille_debian.org

Debian

Wernigerode (D)

28.01.2011

31.01.2010

3

Tim Booth

tbooth_ceh.ac.uk

NERC (?BioLinux)

Oxford (UK)

28.01.2011

31.01.2010

4

Pjotr Prins

U Wageningen (Debian)

Wageningen/Groningen (NL)

5

Alan Williams

U Manchester (Taverna)

Manchester (UK)

6

Hajo Krabbenhöft

M.sc. student

Lübeck (D)

28.01.2011

31.01.2010

7

Yask Gupta

Ph.D. student

Lübeck (D)

28.01.2011

31.01.2010

8

Kushal Sejwal

Ph.D. student

Würzburg (D)

28.01.2011

31.01.2010

  • Pending: Goettingen, Cambridge, Glasgow, Stockholm, Helsinki, Hamburg

Agenda

  • improving our interaction with BioLinux

  • integration of public resources
    • brainstorm about how data.debian.org could help
    • review getData and link it with several packages

  • review of latest developments
    • Bio* roundup
    • Ensembl
    • Cloud computing
    • Next generation sequencing
    • BioLib

      • strategies for packaging with minimal redundancy across packages
      • first upload to experimental
    • Taverna

      • formulating joint workflows
      • identify missing packagings
      • plan for packaging Taverna itself
  • organisational issues
    • ties to pkg-java

    • relation to other Blends

    • identify missing packages and setting priorities
  • strategies for further development
    • thinning the line between Debian and upstream
    • thinning the line between Debian and educators
    • outreach
      • first joint paper recently accepted in BMC Bioinformatics
      • papers citing or mentioning us
      • books and book chapters

Acknowledgements

the sprint has been possible thanks to:

  • travel support by U Manchester, NERC
  • we still hope for some external contributions


CategorySprint