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= Debian Med Blend meeting in Lübeck = = Debian Med Blend meeting in Lübeck =
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It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-low-hanging fruits. It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.
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== Tops ==
 * improving our interaction with BioLinux@Oxford - Tim already agreed to come
== Location, Date ==

 * when: January 28-31, 2011
 * where: Travemünde (close to Lübeck)

== Participants ==

|| Name || Email || Organisation || Living in || Arrival at || Departure at ||
|| Steffen Möller || moeller_debian.org || Debian || Lübeck (Germany) || 28.01.2011 || 31.01.2010 ||
|| Andreas Tille || tille_debian.org || Debian || Wernigerode (Germany) || 28.01.2011 || 31.01.2010 ||
|| Tim Booth || tbooth_ceh.ac.uk || [[http://nebc.nerc.ac.uk/tools/bio-linux-5/bio-linux-5.0|BioLinux]] || Oxford || 28.01.2011 || 31.01.2010 ||

 * Pending: Groningen, Cambridge, Manchester, Glasgow



== Agenda ==
 * improving our interaction with [[http://nebc.nerc.ac.uk/tools/bio-linux-5/bio-linux-5.0|BioLinux]]
  * Finding ways to make better use of [[DebianMed|Debian Med]] in [[http://nebc.nerc.ac.uk/tools/bio-linux-5/bio-linux-5.0|BioLinux]] to save man power
  * Integrating bits into [[DebianMed|Debian Med]] which are not yet available
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  * Bio* roundup
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  * Cloud computing
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  * BioLib
  * Taverna
  * [[http://www.biolib.cz/en/main/|BioLib]] (if Groningen comes)
   * strategies for packaging with minimal redundancy across packages
   * first upload to experimental
  * [[http://www.taverna.org.uk/introduction/taverna-in-use/biology/|Taverna]] (if Manchester comes)
   * formulating joint workflows
   * identify missing packagings
   * plan for packaging Taverna itself
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  * ties to [[https://alioth.debian.org/projects/pkg-java/|pkg-java]]
  * relation to other [[DebianPureBlends|Blends]]
  * identify missing packages and setting priorities
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 * Status of health record systems in Debian
   * Status of [[http://wiki.gnumed.de/bin/view/Gnumed|GnuMed]] in Debian and further development
   * Status of [[http://openmrs.org/|OpenMRS]] in Debian (currently in NEW, hopefully in Debian at the time of the meeting)
   * Discuss issues to get [[http://debian-med.alioth.debian.org/tasks/his#fis-gtm|GT/M]] (a free Mumps implementation) packaged to be able to get finally [[http://debian-med.alioth.debian.org/tasks/his#vista|VistA]] into Debian
 * Discuss important target packages for medical imaging like [[http://debian-med.alioth.debian.org/tasks/imaging#invesalius|Invesalius]] and [[http://debian-med.alioth.debian.org/tasks/imaging#bioimagesuite|Bioimagesuite]] and identify others with higher priority
 * Issues which might brought up by NeuroDebian team of a member of them might join the meeting
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== Participants ==
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* Confirmed: Andreas <tille>, Steffen <moeller>, Tim@Oxford
* Pending: Groningen, Cambridge, Manchester, Glasgow
== Reports ==
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== Venue ==
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A hotel in Travem&uuml;nde. == Acknowledgements ==
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== Sponsors == the sprint has been possible thanks to:
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None, yet.  * sponsor (non yet)
 * venue ...


----
CategorySprint

Debian Med Blend meeting in Lübeck

It seems somewhat amazing, but most of the Debian Med contributors have never met in person before. We think that to maximise the user experience, we shall get together, talk about more than our individual packages and identify some lower and some not-so-low-hanging fruits.

Location, Date

  • when: January 28-31, 2011
  • where: Travemünde (close to Lübeck)

Participants

Name

Email

Organisation

Living in

Arrival at

Departure at

Steffen Möller

moeller_debian.org

Debian

Lübeck (Germany)

28.01.2011

31.01.2010

Andreas Tille

tille_debian.org

Debian

Wernigerode (Germany)

28.01.2011

31.01.2010

Tim Booth

tbooth_ceh.ac.uk

BioLinux

Oxford

28.01.2011

31.01.2010

  • Pending: Groningen, Cambridge, Manchester, Glasgow

Agenda

  • improving our interaction with BioLinux

  • integration of public resources
    • brainstorm about how data.debian.org could help
    • review getData and link it with several packages

  • review of latest developments
    • Bio* roundup
    • Ensembl
    • Cloud computing
    • Next generation sequencing
    • BioLib (if Groningen comes)

      • strategies for packaging with minimal redundancy across packages
      • first upload to experimental
    • Taverna (if Manchester comes)

      • formulating joint workflows
      • identify missing packagings
      • plan for packaging Taverna itself
  • strategies for further development
    • thinning the line between Debian and upstream
    • ties to pkg-java

    • relation to other Blends

    • identify missing packages and setting priorities
    • outreach
      • first joint paper recently accepted in BMC Bioinformatics
      • papers citing or mentioning us
      • books and book chapters
  • Status of health record systems in Debian
    • Status of GnuMed in Debian and further development

    • Status of OpenMRS in Debian (currently in NEW, hopefully in Debian at the time of the meeting)

    • Discuss issues to get GT/M (a free Mumps implementation) packaged to be able to get finally VistA into Debian

  • Discuss important target packages for medical imaging like Invesalius and Bioimagesuite and identify others with higher priority

  • Issues which might brought up by NeuroDebian team of a member of them might join the meeting

Reports

Acknowledgements

the sprint has been possible thanks to:

  • sponsor (non yet)
  • venue ...


CategorySprint