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Debian Med 2013 Sprint

Location, Date

http://www.urlaub-schoenberger-strand.de/images/ostsee-schoenberger-strand.jpg

When:

23rd/24th of February, 2013

Where:

Schönberger Strand near Kiel, Germany Wikipedia OpenStreetMap

Haus Felsenburg (literally: "House Rock Castle" ... fits our distro)

As for last years we managed to avoid the (nice and well connected, though) University buildings and found a family-run hotel at the Waterkant. It is at €50 per night and kindly just add your name below and do not to seek accommodation independently, so we all find our slots to talk to everyone, unconstrained of daytime schedules.

Who:

Enthusiasts and enthusiastic professionals in Medical-/Bioinformatics working with Debian/Ubuntu/Bio-Linux.

Travel:

Within Germany you may prefer one of the high speed trains going directly to Kiel. Otherwise, fly to Hamburg on the 22nd, preferably, and inform us so we get some joint transport organised. When you arrive at Hamburg Airport, do NOT take a train from Hamburg main station, take the Kielius or KielExx. When flying to Lübeck, or getting there easily from Copenhagen or from Stettin, you can share a car with one of us. If you go directly to Kiel (via Kielius, KielExx or train) you arrive at the main train station. From there you can take an hourly direct bus (Line 201) to Schönberg. The tour takes ca. 35 minutes and costs 4,30 €. From the bus stop (which is the final one) you can easily walk to the hotel.

Registration:

Free!

Please arrive at the 22nd if possible, so we have a warm start on the 23rd.

Participants

Needing Accommodation

No

Name

Email

confirmed

needs accom.

Organisation

Living in

Arrival at

Departure at

1

Steffen Möller

<moeller>

yes

yes

U Lübeck (Debian)

Lübeck (D)

22.2.

24.2.

2

Andreas Tille

<tille>

yes

yes

Debian

Wernigerode (D)

22.02. 16:02

25.02. 06:12

3

Ivo Maintz

pre.sur_biologie.hu-berlin.de

yes

yes

HU (Sys Biol)

Berlin (D)

4

Laszlo Kajan

lsur_rostlab.org

yes

yes

Rostlab / Debian

Munich (D)

22/02 17:21

24/02 17:21

5

Alex Mestiashvili

yes

yes

TU Dresden / Debian

Dresden (D)

6

Sascha Steinbiss

sur_zbh.uni-hamburg.de

yes

yes

U Hamburg / Debian

Hamburg (D)

22/02

24/02

7

Dirk Repsilber

sur_fbn-dummerstorf.de

yes

Rostock (D)

22/02

24/02

8

Olivier Sallou

<osallou>

yes

yes

U Rennes 1 (Debian)

Rennes (F)

22/02 16:55 (Hamburg Airport))

25/02

9

Tony Travis

tony.travis_ed.ac.uk

yes

yes

U Edinburgh

Banchory (Scotland, UK)

22/2

24/2

10

Christoph Gille

pre.sur_charite.de

yes

Charité

Berlin (D)

11

Tim Booth

tsur_ceh.ac.uk

yes

yes

NERC, Bio-Linux

Oxford (UK)

22/02

24/02

12

Matus Kalas

pre.sur_bccs.uib.no

almost(!)

yes

U Bergen

Bergen (N)

22/02

13

Uwe Beckert

yes

yes

Rechenkraft.net

Berlin (D)

22/02

24/02

14

Christian Beer

djangofett_gmx.net

yes

yes

Rechenkraft.net

22/02

24/02

2 Personen

Locals

No

Name

Email

confirmed

needs accom.

Organisation

Living in

Arrival at

Departure at

1

Ingo Thomsen

i.sur_ikmb.uni-kiel.de

yes

local

U Kiel

Kiel (D)

2

David ???

local

3

André ???

local

4

Gerd Pfeiffer

local

5

Michael Banck

<mbanck>

yes

no

Debian

Munich (D)

23/02

23/02

6

Hajo Krabbenhöft

<moeller>

yes

no

Uni Lübeck

Lübeck (D)

7

Yask Gupta

<moeller>

yes

no

Uni Lübeck

24/02

24/02

8

Christian Steigies

<cts>

yes

no

CAU / Debian

Kiel (D)

Agenda

This preliminary collection of topics will transform more into team building once the list of attendees becomes more stable.

  • Welcome
    • Schedule: Friday late night
    • Preparation/Organisation: Ingo, Andreas
  • Joint discusion: Positioning of Debian Med as a community and resources we should reserve for it
    • Schedule: Friday and Sunday
    • Tops:
      • Knowledge transporter and archive
        • legacy applications, snapshot.d.o

        • wiki
        • inter/personal and inter-organisational network
        • connects to EU projects, Conferences
      • Should we have a dedicated machine for us? Cloud presence?
      • DebianMed <-> Debian Science <-> Debichem <-> Bio-Linux

      • ...?
    • Preparation/Organisation: Steffen
  • Presentations from participants:
    • Schedule: any time
    • Add yourself here

    • Tim Booth - Live USB and Cloud environments as a practical teaching platform
  • Isolating/addressing technical issues with packages in Debian today
    • Participants: everyone, problem-specific team building
    • Schedule: Friday/early Saturday - and the rest of the meeting
    • Preparation/Organization: Laszlo, Andreas (please!)
  • Identification of packages missing for today's and future routine workflows
    • Participants: everyone
    • Tops:
      • Next generation sequencing (Ingo)
      • Structural computing (Michael)
      • System biology (Ivo)
      • Taverna (if anyone fancies tackling it? - Tim) (Steffen contributes pkg-escience)

      • ...
    • Schedule: Saturday evening
    • Preparation/Organization: Ingo, Michael, Ivo
  • FPGAs for acceleration of Bioinformatics (and biological sciences with it)
    • Participants: everyone interested
    • Tops:
      • ?BioPerl, BioJava, ?BioPython, ?BioRuby access to FPGA blast implementation

      • Support by Debian packages
    • Preparation/Organization: ?SciEngines, Steffen

  • Debian packages for complete BOINC projects

    • Participants: everyone interested
    • Preparation/Organisation: Uwe, Steffen
    • Ideas:
      • extended outreach of computational biology
      • promotion of Debian's cross-platformness
      • unlimited resources for research groups
  • Tour through Kiel labs
    • Participants: everyone interested
    • Preparation/Organisation: Ingo
  • Certain packaging projects

Reports

(pointers to communication about the sprint)

See also

Acknowledgements

the sprint has been possible thanks to:

  • donations to the Debian project

  • sponsor ...
  • venue ...
  • etc ...


CategorySprint DebianMed