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||<|3>Where: ||[[http://en.wikipedia.org/wiki/Sch%C3%B6nberg,_Pl%C3%B6n|Schönberger Strand]] near [[http://en.wikipedia.org/wiki/Kiel|Kiel]], Germany [[http://en.wikipedia.org/wiki/Kiel|Wikipedia]] [[https://maps.google.de/maps?q=Schönberger+Strand|Google Maps]]|| ||<|3>Where: ||[[http://en.wikipedia.org/wiki/Sch%C3%B6nberg,_Pl%C3%B6n|Schönberger Strand]] near [[http://en.wikipedia.org/wiki/Kiel|Kiel]], Germany [[http://en.wikipedia.org/wiki/Kiel|Wikipedia]] [[http://www.openstreetmap.org/?lat=54.411006&lon=10.419969&zoom=18&layers=M|OpenStreetMap]]||

Debian Med 2013 Sprint

Location, Date

http://www.urlaub-schoenberger-strand.de/images/ostsee-schoenberger-strand.jpg

When:

23rd/24th of February, 2013

Where:

Schönberger Strand near Kiel, Germany Wikipedia OpenStreetMap

Haus Felsenburg (literally: "House Rock Castle" ... fits our distro)

As for last years we managed to avoid the (nice and well connected, though) University buildings and found a family-run hotel at the Waterkant. It is at €50 per night and kindly just add your name below and do not to seek accommodation independently, so we all find our slots to talk to everyone, unconstrained of daytime schedules.

Who:

Enthusiasts and enthusiastic professionals in Medical-/Bioinformatics working with Debian/Ubuntu/Bio-Linux.

Travel:

Within Germany you may prefer one of the high speed trains going directly to Kiel. Otherwise, fly to Hamburg on the 22nd, preferably, and inform us so we get some joint transport organised. When you arrive at Hamburg Airport, do NOT take a train from Hamburg main station, take the Kielius or KielExx. When flying to Lübeck, or getting there easily from Copenhagen or from Stettin, you can share a car with one of us.

Registration:

Free!

Please arrive at the 22nd if possible, so we have a warm start on the 23rd.

Participants

Needing Accommodation

No

Name

Email

confirmed

needs accom.

Organisation

Living in

Arrival at

Departure at

1

Steffen Möller

<moeller>

yes

yes

U Lübeck (Debian)

Lübeck (D)

22.2.

24.2.

2

Andreas Tille

<tille>

yes

yes

Debian

Wernigerode (D)

22.02. 16:02

25.02. 06:12

3

Ivo Maintz

pre.sur_biologie.hu-berlin.de

yes

yes

HU (Sys Biol)

Berlin (D)

4

Laszlo Kajan

lsur_rostlab.org

yes

yes

Rostlab / Debian

Munich (D)

22/02 17:21

24/02 17:21

5

Alex Mestiashvili

yes

yes

TU Dresden / Debian

Dresden (D)

6

Sascha Steinbiss

sur_zbh.uni-hamburg.de

yes

yes

U Hamburg / Debian

Hamburg (D)

7

Dirk Repsilber

sur_fbn-dummerstorf.de

yes

Rostock (D)

8

Olivier Sallou

<osallou>

yes

yes

U Rennes 1 (Debian)

Rennes (F)

22/2

25/02

9

Tony Travis

<tony.travis_ed.ac.uk>

yes

yes

U Edinburgh

Banchory (Scotland, UK)

22/2

24/2

10

Christoph Gille

pre.sur_charite.de

Yes

Charité

Berlin (D)

11

Tim Booth

tsur_ceh.ac.uk

almost(!)

Yes

NERC, Bio-Linux

Oxford (UK)

22/2

24/2

Locals

No

Name

Email

confirmed

needs accom.

Organisation

Living in

Arrival at

Departure at

1

Ingo Thomsen

i.sur_ikmb.uni-kiel.de

yes

local

U Kiel

Kiel (D)

2

David ???

local

3

André ???

local

4

Gerd Pfeiffer

local

5

Michael Banck

<mbanck>

no

Debian

Munich (D)

6

Hajo Krabbenhöft

<moeller>

yes

no

Uni Lübeck

Lübeck (D)

7

Yask Gupta

<moeller>

yes

no

Uni Lübeck

8

Christian Steigies

<cts>

yes

no

CAU / Debian

Kiel (D)

Pending

No

Name

Email

confirmed

needs accom.

Organisation

Living in

Arrival at

Departure at

Thorsten Alteholz

debian_alteholz.de

yes

Debian

(D)

Alan

Manchester

no

yes

<-5>calendar in post-natal fuzzy state

Jim

Glasgow

no

yes

<-5>calendar in post-natal fuzzy state

Will+Eagle

Babraham

no

yes

<-5>calendar overflow error

One could imagine that it helps those with conflicts in their calendar to hear when there are individuals in eager expectation to meet in Kiel.

Agenda

This preliminary collection of topics will transform more into team building once the list of attendees becomes more stable.

  • Welcome
    • Schedule: Friday late night
    • Preparation/Organisation: Ingo, Andreas
  • Joint discusion: Positioning of Debian Med as a community and resources we should reserve for it
    • Schedule: Friday and Sunday
    • Tops:
      • Knowledge transporter and archive
        • legacy applications, snapshot.d.o

        • wiki
        • inter/personal and inter-organisational network
        • connects to EU projects, Conferences
      • Should we have a dedicated machine for us? Cloud presence?
      • DebianMed <-> Debian Science <-> Debichem <-> Bio-Linux

      • ...?
    • Preparation/Organisation: Steffen
  • Presentations from participants:
    • Schedule: any time
    • Add yourself here

    • Tim Booth - Live USB and Cloud environments as a practical teaching platform
  • Isolating/addressing technical issues with packages in Debian today
    • Participants: everyone, problem-specific team building
    • Schedule: Friday/early Saturday - and the rest of the meeting
    • Preparation/Organization: Laszlo, Andreas (please!)
  • Identification of packages missing for today's and future routine workflows
    • Participants: everyone
    • Tops:
      • Next generation sequencing (Ingo)
      • Structural computing (Michael)
      • System biology (Ivo)
      • Taverna (if anyone fancies tackling it? - Tim)
      • ...
    • Schedule: Saturday evening
    • Preparation/Organization: Ingo, Michael, Ivo
  • FPGAs for acceleration of Bioinformatics (and biological sciences with it)
    • Participants: everyone interested
    • Tops:
      • ?BioPerl, BioJava, ?BioPython, ?BioRuby access to FPGA blast implementation

      • Support by Debian packages
    • Preparation/Organization: ?SciEngines, Steffen

  • Tour through Kiel labs
    • Participants: everyone interested
    • Preparation/Organisation: Ingo
  • Certain packaging projects
    • meme: A. Tille, T. Booth

    • flexbar: A. Tille, T. Travis

    • goby A. Tille, O. Sallou

    • Suggestion: freecontact - a new, free, fast reimplementation of the PSICOV algorithm: L. Kajan

Reports

(pointers to communication about the sprint)

See also

Acknowledgements

the sprint has been possible thanks to:

  • donations to the Debian project

  • sponsor ...
  • venue ...
  • etc ...


CategorySprint DebianMed