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Please arrive at the 22nd if possible, so we have a warm start on the 23rd. |
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| * Welcome * Schedule: Friday late night * Preparation/Organisation: Ingo, Andreas * Joint discusion: Positioning of Debian Med as a community and resources we should reserve for it * Schedule: Friday and Sunday * Tops: * Knowledge transporter and archive * legacy applications, [[http://snapshot.debian.org|snapshot.d.o]] * wiki * inter/personal and inter-organisational network * connects to EU projects, Conferences * Should we have a dedicated machine for us? Cloud presence? * DebianMed <-> Debian Science <-> Debichem <-> Bio-Linux * ...? * Preparation/Organisation: Steffen * Presentations from participants: * Schedule: any time * ''Add yourself here'' * Isolating/addressing technical issues with packages in Debian today * Participants: everyone, problem-specific team building * Schedule: Friday/early Saturday - and the rest of the meeting * Preparation/Organization: Laszlo, Andreas (please!) |
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| * Positioning of Debian Med as a community and resources we should reserve for it * Knowledge transporter * Cloud infrastructure designer * Interpersonal network * ...? * FPGAs for application acceleration * Tour through the Kiel labs |
* Participants: everyone * Tops: * Next generation sequencing (Ingo) * Structural computing (Michael) * System biology (Ivo) * ... * Schedule: Saturday evening * Preparation/Organization: Ingo, Michael, Ivo * FPGAs for acceleration of Bioinformatics (and biological sciences with it) * Participation: everyone interested * Tops: * BioPerl, BioJava, BioPython, BioRuby access to FPGA blast implementation * Support by Debian packages * Preparation/Organization: SciEngines, Steffen * Tour through Kiel labs * Participation: everyone interested * Preparation/Organisation: Ingo |
Debian Med 2013 Sprint
Location, Date
When: |
23rd/24th of February, 2013 |
Where: |
Kiel, Germany Wikipedia Google Maps |
The exact venue is still negotiated. As for last years we attempt to avoid the (nice and well connected, though) University buildings and find a family-run hotel at the Waterkant. We have offers at €50 per night and kindly ask to just add your name below and not to seek accommodation independently, so we all find our slots to talk to everone, unconstrained of daytime schedules. |
|
Who: |
Enthusiasts and enthusiastic professionals in Medical-/Bioinformatics working with Debian/Ubuntu/Bio-Linux. |
Travel: |
Within Germany you may prefer one of the high speed trains going directly to Kiel. Otherwise, fly to Hamburg on the 22nd, preferably, and inform us so we get some joint transport organised, or there are trains from Hamburg main station. When flying to Lübeck, or getting there easily from Copenhagen or from Stettin, you can share a car with one of us. |
Registration: |
Free! |
Please arrive at the 22nd if possible, so we have a warm start on the 23rd.
Participants
Needing Accommodation
No |
Name |
confirmed |
needs accom. |
Organisation |
Living in |
Arrival at |
Departure at |
|
1 |
Steffen Möller |
<moeller> |
yes |
yes |
U Lübeck (Debian) |
Lübeck (D) |
|
|
2 |
Andreas Tille |
<tille> |
yes |
yes |
Debian |
Wernigerode (D) |
22.02. 16:02 |
25.02. 06:12 |
3 |
Ivo Maintz |
pre.sur_biologie.hu-berlin.de |
yes |
yes |
HU (Sys Biol) |
Berlin (D) |
|
|
4 |
Laszlo Kajan |
lsur_rostlab.org |
yes |
yes |
Rostlab / Debian |
Munich (D) |
|
|
5 |
Alex Mestiashvili |
|
yes |
yes |
TU Dresden / Debian |
Dresden (D) |
|
|
6 |
Sascha Steinbiss |
sur_zbh.uni-hamburg.de |
yes |
yes |
U Hamburg / Debian |
Hamburg (D) |
|
|
7 |
Dirk Repsilber |
sur_fbn-dummerstorf.de |
yes |
|
|
Rostock (D) |
|
|
8 |
Olivier Sallou |
<osallou> |
no |
yes |
U Rennes 1 (Debian) |
Rennes (F) |
|
|
9 |
Tony Travis |
<tony.travis_ed.ac.uk> |
|
Yes |
U Edinburgh |
Banchory (Scotland, UK) |
|
|
Locals
No |
Name |
confirmed |
needs accom. |
Organisation |
Living in |
Arrival at |
Departure at |
|
1 |
Ingo Thomsen |
i.sur_ikmb.uni-kiel.de |
yes |
local |
U Kiel |
Kiel (D) |
|
|
2 |
David ??? |
|
|
local |
|
|
|
|
3 |
André ??? |
|
|
local |
|
|
|
|
4 |
Gerd Pfeiffer |
|
|
local |
|
|
|
|
5 |
Michael Banck |
<mbanck> |
|
no |
Debian |
Munich (D) |
|
|
6 |
Hajo Krabbenhöft |
<moeller> |
yes |
no |
Uni Lübeck |
Lübeck (D) |
|
|
7 |
Yask Gupta |
<moeller> |
yes |
no |
Uni Lübeck |
|
|
|
Pending
No |
Name |
confirmed |
needs accom. |
Organisation |
Living in |
Arrival at |
Departure at |
|
|
Thorsten Alteholz |
debian_alteholz.de |
|
yes |
Debian |
(D) |
|
|
|
Alan |
Manchester |
no |
yes |
<-5>calendar in post-natal fuzzy state |
|||
|
Jim |
Glasgow |
no |
yes |
<-5>calendar in post-natal fuzzy state |
|||
|
Will+Eagle |
Babraham |
no |
yes |
<-5>calendar overflow error |
One could imagine that it helps those with conflicts in their calendar to hear when there are individuals in eager expectation to meet in Kiel.
Agenda
This preliminary collection of topics will transform more into team building once the list of attendees becomes more stable.
- Welcome
- Schedule: Friday late night
- Preparation/Organisation: Ingo, Andreas
- Joint discusion: Positioning of Debian Med as a community and resources we should reserve for it
- Schedule: Friday and Sunday
- Tops:
- Knowledge transporter and archive
legacy applications, snapshot.d.o
- wiki
- inter/personal and inter-organisational network
- connects to EU projects, Conferences
- Should we have a dedicated machine for us? Cloud presence?
DebianMed <-> Debian Science <-> Debichem <-> Bio-Linux
- ...?
- Knowledge transporter and archive
- Preparation/Organisation: Steffen
- Presentations from participants:
- Schedule: any time
Add yourself here
- Isolating/addressing technical issues with packages in Debian today
- Participants: everyone, problem-specific team building
- Schedule: Friday/early Saturday - and the rest of the meeting
- Preparation/Organization: Laszlo, Andreas (please!)
- Identification of packages missing for today's and future routine workflows
- Participants: everyone
- Tops:
- Next generation sequencing (Ingo)
- Structural computing (Michael)
- System biology (Ivo)
- ...
- Schedule: Saturday evening
- Preparation/Organization: Ingo, Michael, Ivo
- FPGAs for acceleration of Bioinformatics (and biological sciences with it)
- Tour through Kiel labs
- Participation: everyone interested
- Preparation/Organisation: Ingo
Reports
(pointers to communication about the sprint)
- report: (e.g. link to lists.d.o archives)
?Overview and reports on past meetings since 2011
Debian Med activities
Packages in Next Generation Sequencing
Overview on all tasks of Debian Med
See also
pre-BOSC/ISMB Codefest 2013 in Berlin
Acknowledgements
the sprint has been possible thanks to:
donations to the Debian project
- sponsor ...
- venue ...
- etc ...