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← Revision 13 as of 2009-03-16 03:32:12 ⇥
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||Hapoltyping||[http://www.biostat.umn.edu/~nali/SoftwareListing.html Hotspotter]||no licence||did not build out of the box on ppc|| ||no|| ||Association studies||[http://claire.bardel.free.fr/software.html altree]||as Perl itself||unofficial ([http://dept-info.labri.fr/~danjean/deb.html#altree ens-lyon])||free||no|| ||Linkage desequilibrium studies||[http://www.genome.mcgill.ca/~mlemire/software.html SUP]||GPL||Depends on FastSLINK||free||no|| ||QTL / SNP analysis||[http://www.well.ox.ac.uk/happy/happyR.shtml happy]||[http://www.well.ox.ac.uk/happy/disclaimer.shtml free]||R package||free||no|| |
||Hapoltyping||[[http://www.biostat.umn.edu/~nali/SoftwareListing.html|Hotspotter]]||no licence||did not build out of the box on ppc|| ||no|| ||Association studies||[[http://claire.bardel.free.fr/software.html|altree]]||as Perl itself||unofficial ([[http://dept-info.labri.fr/~danjean/deb.html#altree|ens-lyon]])||free||no|| ||Linkage desequilibrium studies||[[http://www.genome.mcgill.ca/~mlemire/software.html|SUP]]||GPL||Depends on FastSLINK||free||no|| ||QTL / SNP analysis||[[http://www.well.ox.ac.uk/happy/happyR.shtml|happy]]||[[http://www.well.ox.ac.uk/happy/disclaimer.shtml|free]]||R package||free||no|| |
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||QTL analysis||[http://statgen.ncsu.edu/eQTLViewer/ eQTLViewer]||GPL||depends on perl||free||no|| ||Association analysis||[http://pngu.mgh.harvard.edu/~purcell/plink PLINK]||GPL||Looks simple||free||no|| ||Haplotype analysis||[http://www.broad.mit.edu/mpg/haploview Haploview]||MIT||depends on java||free||no|| ||Analysis of recombination histories||[http://www.stats.ox.ac.uk/~lyngsoe/beagle/ Beagle]||LGPL||depends on C and python||free||no|| ||Detection of microsatellites||[http://code.google.com/p/msatcommander/ Msatcommander]||GPL||Depense on wxpython, biopython, primer3||free||no|| |
||QTL analysis||[[http://statgen.ncsu.edu/eQTLViewer/|eQTLViewer]]||GPL||depends on perl||free||no|| ||Association analysis||[[http://pngu.mgh.harvard.edu/~purcell/plink|PLINK]]||GPL||Looks simple||free||no|| ||Haplotype analysis||[[http://www.broad.mit.edu/mpg/haploview|Haploview]]||MIT||depends on java||free||no|| ||Analysis of recombination histories||[[http://www.stats.ox.ac.uk/~lyngsoe/beagle/|Beagle]]||LGPL||depends on C and python||free||no|| ||Detection of microsatellites||[[http://code.google.com/p/msatcommander/|Msatcommander]]||GPL||Depense on wxpython, biopython, primer3||free||no|| |
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Back to ["DebianScience/Biology"] | Back to [[DebianScience/Biology]] |
Task |
Name |
Licence |
Packaging |
Importance |
Listed on microbio.wml? |
Hapoltyping |
no licence |
did not build out of the box on ppc |
|
no |
|
Association studies |
as Perl itself |
unofficial (ens-lyon) |
free |
no |
|
Linkage desequilibrium studies |
GPL |
Depends on FastSLINK |
free |
no |
|
QTL / SNP analysis |
R package |
free |
no |
||
QTL analysis |
R/qtl |
free |
Debian R package r-cran-qtl |
important |
? |
QTL analysis |
GPL |
depends on perl |
free |
no |
|
Association analysis |
GPL |
Looks simple |
free |
no |
|
Haplotype analysis |
MIT |
depends on java |
free |
no |
|
Analysis of recombination histories |
LGPL |
depends on C and python |
free |
no |
|
Detection of microsatellites |
GPL |
Depense on wxpython, biopython, primer3 |
free |
no |
|
Linkage disequilibrium mapping |
http://www.daimi.au.dk/~mailund/HapCluster/ ?HapCluster++ |
GPL |
rpms available |
free, up-to-date |
no |
Task |
Name |
Licence |
Packaging |
Importance |
Listed on microbio.wml? |
Back to DebianScience/Biology