Task |
Name |
Licence |
Packaging |
Importance |
Listed on microbio.wml? |
Hapoltyping |
no licence |
did not build out of the box on ppc |
|
no |
|
Association studies |
as Perl itself |
unofficial (ens-lyon) |
free |
no |
|
Linkage desequilibrium studies |
GPL |
Depends on FastSLINK |
free |
no |
|
QTL / SNP analysis |
R package |
free |
no |
||
QTL analysis |
R/qtl |
free |
Debian R package r-cran-qtl |
important |
? |
QTL analysis |
GPL |
depends on perl |
free |
no |
|
Association analysis |
GPL |
Looks simple |
free |
no |
|
Haplotype analysis |
MIT |
depends on java |
free |
no |
|
Analysis of recombination histories |
LGPL |
depends on C and python |
free |
no |
|
Detection of microsatellites |
GPL |
Depense on wxpython, biopython, primer3 |
free |
no |
|
Linkage disequilibrium mapping |
http://www.daimi.au.dk/~mailund/HapCluster/ ?HapCluster++ |
GPL |
rpms available |
free, up-to-date |
no |
Task |
Name |
Licence |
Packaging |
Importance |
Listed on microbio.wml? |
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