1263
Comment: benchmark alignments database
|
1408
|
Deletions are marked like this. | Additions are marked like this. |
Line 4: | Line 4: |
||[http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/ BAliBASE2]||Sequence aligments version2, and a c program for scoring||unknown|| || |
Name |
Contents |
Licence |
Package |
[http://www.ncbi.nlm.nih.gov/Genbank/GenbankOverview.html Genbank] |
Public sequences |
Publicly available |
|
[http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE/ BAliBASE] |
Sequence aligments and a c program for scoring |
unknown |
|
[http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/ BAliBASE2] |
Sequence aligments version2, and a c program for scoring |
unknown |
|
[http://www.pseudogene.org www.pseudogene.org] |
pseudogenes |
unknown |
|
[http://jaspar.genereg.net/ Jaspar] |
Transcription factor bindng sites |
"Freely available" |
|
[http://www.bcgsc.ca:8080/oregano/Index.jsp ORegAnno] |
Regulatory sequences |
LGPL |
|
[http://rebase.neb.com REbase] |
Restriction Enzymes |
? |
[http://pdb.finkproject.org/pdb/package.php/embossdb-rebase fink] |
Repeat elements |
Academic, registration needed |
|
|
[http://www.genetics.wustl.edu/fish_lab/repeats Zebrafish repeats] |
Repeat elements (Zebrafish) |
no license |
|
Probably, many free databases can be found in the database issue of Nucleic Acid Research http://nar.oxfordjournals.org/content/vol34/suppl_1/index.dtl
We also need open-source software to warehouse the databases
Name |
Licence |
Package |
[http://bioinformatics.ai.sri.com/biowarehouse/ ?BioWarehouse] |
MPL 1.1 |
|
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