Several libraries to develop biological applications are just included in Debian.  You can find a list of them at the [[http://debian-med.alioth.debian.org/tasks/bio-dev|Debian Med tasks page bio-dev]].  Here you can find libraries which are not yet included in Debian.

||Library||Purpose||Language||Licence||Package||
||[[http://www.ii.uib.no/~ketil/bioinformatics/repos/bio/|BioHaskell]]||General||Haskell||LGPL|| ||
||Bio++||sequence analysis, phylogenetics, molecular evolution and population genetics||C++||CeCILL|| ||
||BioCocoa =< 1.7||General||Objective C||(L)GPL||main||
||BioCocoa2||General||Objective C||Creative Commons||main||
||[[http://www.biophp.org/|BioPHP]]||General||PHP||GPL||  ||
||[[http://btk.sourceforge.net/|Biomolecule Toolkit ]]||structural modelling||C++||LGPL|| ||
||[[http://cbl.sourceforge.net/|Portable CBL]]||Sequences||C||LGPL|| ||
||[[http://pycogent.sourceforge.net|COGENT]]||Sequence analysis||Python||GPL||no||
||[[http://moltools-lib.sourceforge.net/|MolTools-lib]]||Sequence manipulation and analysis||Java||(L)GPL|| ||
||[[http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/|NCBI C++ Toolkit]]||Web IO?||C++||Public domain + LGPL||Closed ITP (DebianBug:150636)||
||[[http://www.cebl.auckland.ac.nz/pal-project/|PAL]]||Phylogenetic Analysis Library||Java||LGPL||no||
||[[http://sourceforge.net/projects/posa|Perl Objects for Sequence Analysis]]||Chromatograms, SNPs||Perl|| || ||
||[[http://bioinfo.mbi.ucla.edu/pygr|pygr]]||Graph database interfaces development||Python||GPL||no||
||[[http://libseq.sourceforge.net/|libseq]]||Sequence manipulation||C++||GPL|| ||
||[[http://libseqio.sourceforge.net/|libseqio]]||Sequence analysis||C++||LGPL|| ||
||[[http://www.sbml.org/software/libsbml/|libsbml]]||System Biology Markup Language Library||Cross-language||LGPL||ITP (DebianBug:241111)||
||[[http://forkhead.cgb.ki.se/TFBS/|libtfbs]]||Sequence analysis||Perl||Artistic||packaged ([[http://tp12.pzr.uni-rostock.de/~moeller/debian/tfbs/|unofficial]])||
||[[http://www.daimi.au.dk/~mailund/SNPfile/|SNPfile]]||SNP dataset manipulation||C++||GPL|| ||
||[[http://swissknife.sourceforge.net|Swissknife]]||Manipulate SwissProt files||Perl||GPL|| ||
||[[http://sourceforge.net/projects/trace-utils/|Trace Utilities]]||Chromatograms, SNPs|| ||(L)GPL|| ||

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