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||[http://www.daimi.au.dk/~mailund/SNPfile/ SNPfile]||SNP dataset manipulation||C++||GPL|| ||no|| |
Library |
Purpose |
Language |
Licence |
Package |
Listed on microbion.wml? |
Ajax |
IO |
C |
LGPL |
emboss |
Yes (emboss) |
[http://www.ii.uib.no/~ketil/bioinformatics/repos/bio/ ?BioHaskell] |
General |
Haskell |
LGPL |
|
no |
Bio++ |
sequence analysis, phylogenetics, molecular evolution and population genetics |
C++ |
CeCILL |
|
no |
?BioCocoa =< 1.7 |
General |
Objective C |
(L)GPL |
main |
No |
?BioCocoa2 |
General |
Objective C |
Creative Commons |
main |
No |
General |
Java |
LGPL |
@["pkg-escience"] |
No |
|
?BioPerl |
General |
Perl |
Artistic |
main |
Yes |
[http://www.biophp.org/ BioPHP] |
General |
PHP |
GPL |
|
No |
?BioPython |
General |
Python |
?BioPython Licence |
main |
Yes |
?BioRuby |
General |
Ruby |
LGPL |
main |
No |
[http://btk.sourceforge.net/ Biomolecule Toolkit ] |
structural modelling |
C++ |
LGPL |
|
no |
[http://cbl.sourceforge.net/ Portable CBL] |
Sequences |
C |
LGPL |
|
no |
iolib (staden) |
Chromatograms |
C |
BSD |
fink |
no |
[http://moltools-lib.sourceforge.net/ ?MolTools-lib] |
Sequence manipulation and analysis |
Java |
(L)GPL |
|
no |
[http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ NCBI C++ Toolkit] |
Web IO? |
C++ |
Public domain + LGPL |
[http://bugs.debian.org/150636 Closed ITP] |
No |
Nucleus |
Analysis |
C |
LGPL |
emboss |
Yes (emboss) |
Phylogenetic Analysis Library |
Java |
LGPL |
no |
no |
|
[http://sourceforge.net/projects/posa Perl Objects for Sequence Analysis] |
Chromatograms, SNPs |
Perl |
|
|
no |
Graph database interfaces development |
Python |
GPL |
no |
no |
|
[http://libseq.sourceforge.net/ libseq] |
Sequence manipulation |
C++ |
GPL |
|
no |
[http://libseqio.sourceforge.net/ libseqio] |
Sequence analysis |
C++ |
LGPL |
|
no |
[http://www.sbml.org/software/libsbml/ libsbml] |
System Biology Markup Language Library |
Cross-language |
LGPL |
[http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=241111 ITP] |
no |
[http://forkhead.cgb.ki.se/TFBS/ libtfbs] |
Sequence analysis |
Perl |
Artistic |
packaged ([http://tp12.pzr.uni-rostock.de/~moeller/debian/tfbs/ unofficial]) |
no |
[http://www.daimi.au.dk/~mailund/SNPfile/ SNPfile] |
SNP dataset manipulation |
C++ |
GPL |
|
no |
[http://selab.wustl.edu/cgi-bin/selab.pl?mode=software#squid squid] |
sequence analysis |
C |
GPL |
main |
yes |
[http://swissknife.sourceforge.net Swissknife] |
Manipulate ?SwissProt files |
Perl |
GPL |
|
no |
[http://sourceforge.net/projects/trace-utils/ Trace Utilities] |
Chromatograms, SNPs |
|
(L)GPL |
|
no |
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