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||Adun||molecular simulation framework||Objective C||GNU GPL||Yes||dunno||

Library

Purpose

Language

Licence

Package

Listed on microbion.wml?

Adun

molecular simulation framework

Objective C

GNU GPL

Yes

dunno

Ajax

IO

C

LGPL

emboss

Yes (emboss)

[http://www.ii.uib.no/~ketil/bioinformatics/repos/bio/ ?BioHaskell]

General

Haskell

LGPL

no

Bio++

sequence analysis, phylogenetics, molecular evolution and population genetics

C++

CeCILL

no

?BioCocoa =< 1.7

General

Objective C

(L)GPL

main

No

?BioCocoa2

General

Objective C

Creative Commons

main

No

BioJava

General

Java

LGPL

@["pkg-escience"]

No

?BioPerl

General

Perl

Artistic

main

Yes

[http://www.biophp.org/ BioPHP]

General

PHP

GPL

No

?BioPython

General

Python

?BioPython Licence

main

Yes

?BioRuby

General

Ruby

LGPL

main

No

[http://btk.sourceforge.net/ Biomolecule Toolkit ]

structural modelling

C++

LGPL

no

[http://cbl.sourceforge.net/ Portable CBL]

Sequences

C

LGPL

no

iolib (staden)

Chromatograms

C

BSD

fink

no

[http://moltools-lib.sourceforge.net/ ?MolTools-lib]

Sequence manipulation and analysis

Java

(L)GPL

no

[http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ NCBI C++ Toolkit]

Web IO?

C++

Public domain + LGPL

[http://bugs.debian.org/150636 Closed ITP]

No

Nucleus

Analysis

C

LGPL

emboss

Yes (emboss)

[http://www.cebl.auckland.ac.nz/pal-project/ PAL]

Phylogenetic Analysis Library

Java

LGPL

no

no

[http://sourceforge.net/projects/posa Perl Objects for Sequence Analysis]

Chromatograms, SNPs

Perl

no

[http://bioinfo.mbi.ucla.edu/pygr pygr]

Graph database interfaces development

Python

GPL

no

no

[http://libseq.sourceforge.net/ libseq]

Sequence manipulation

C++

GPL

no

[http://libseqio.sourceforge.net/ libseqio]

Sequence analysis

C++

LGPL

no

[http://www.sbml.org/software/libsbml/ libsbml]

System Biology Markup Language Library

Cross-language

LGPL

[http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=241111 ITP]

no

[http://forkhead.cgb.ki.se/TFBS/ libtfbs]

Sequence analysis

Perl

Artistic

packaged ([http://tp12.pzr.uni-rostock.de/~moeller/debian/tfbs/ unofficial])

no

[http://selab.wustl.edu/cgi-bin/selab.pl?mode=software#squid squid]

sequence analysis

C

GPL

main

yes

[http://swissknife.sourceforge.net Swissknife]

Manipulate ?SwissProt files

Perl

GPL

no

[http://sourceforge.net/projects/trace-utils/ Trace Utilities]

Chromatograms, SNPs

(L)GPL

no


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