Several libraries to develop biological applications are just included in Debian. You can find a list of them at the Debian Med tasks page bio-dev. Here you can find libraries which are not yet included in Debian.
Library |
Purpose |
Language |
Licence |
Package |
General |
Haskell |
LGPL |
|
|
Bio++ |
sequence analysis, phylogenetics, molecular evolution and population genetics |
C++ |
CeCILL |
|
?BioCocoa =< 1.7 |
General |
Objective C |
(L)GPL |
main |
?BioCocoa2 |
General |
Objective C |
Creative Commons |
main |
General |
PHP |
GPL |
|
|
structural modelling |
C++ |
LGPL |
|
|
Sequences |
C |
LGPL |
|
|
Sequence analysis |
Python |
GPL |
no |
|
Sequence manipulation and analysis |
Java |
(L)GPL |
|
|
Web IO? |
C++ |
Public domain + LGPL |
Closed ITP (150636) |
|
Phylogenetic Analysis Library |
Java |
LGPL |
no |
|
Chromatograms, SNPs |
Perl |
|
|
|
Graph database interfaces development |
Python |
GPL |
no |
|
Sequence manipulation |
C++ |
GPL |
|
|
Sequence analysis |
C++ |
LGPL |
|
|
System Biology Markup Language Library |
Cross-language |
LGPL |
ITP (241111) |
|
Sequence analysis |
Perl |
Artistic |
packaged (unofficial) |
|
SNP dataset manipulation |
C++ |
GPL |
|
|
Manipulate ?SwissProt files |
Perl |
GPL |
|
|
Chromatograms, SNPs |
|
(L)GPL |
|
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